Gene detail

Detail information of GWHGAAZE002964

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008358788.1	3.7797E-117	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
COG	YP_003372394.1	0.000009	RNP-1 like RNA-binding protein
Swissprot	tr\|Q8W034\|RNP1_ARATH	2E-37	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|M5WIA4\|M5WIA4_PRUPE	3E-116	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06525.1}
TAIR10	AT3G13224.2	1E-75	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89301873	89303514	-
GWHAAZE00000001	mRNA	89301873	89303514	-
GWHAAZE00000001	exon	89301873	89302412	-
GWHAAZE00000001	exon	89302617	89302867	-
GWHAAZE00000001	exon	89302996	89303095	-
GWHAAZE00000001	exon	89303225	89303388	-
GWHAAZE00000001	exon	89303505	89303514	-
GWHAAZE00000001	CDS	89303505	89303514	-
GWHAAZE00000001	CDS	89303225	89303388	-
GWHAAZE00000001	CDS	89302996	89303095	-
GWHAAZE00000001	CDS	89302617	89302867	-
GWHAAZE00000001	CDS	89301873	89302412	-

Transcript Sequence
>GWHTAAZE002968 ATGCTTCAAGGTGCTTTTAATAAGCACTTTGGAAAATATGGGGAGATTACGGATTCTGTAATAATGAAAGATCGTCACACCGGGCAGCCCAGGGGTTTTGGGTTTATTACCTATGCTGATCCTTCCGTAGTAGATGCAGTCATCGAGGATACCCACATCTTCAATGGAAAACAGGTTGAGATCAAACGAACCATTCCAAAAGGGAATTCTCAATCAAAGGATTTCAAAACAAAGAAGATATTCGTTGGAGGCATACCAACTGCAGTCACTGAAGATGAGCTCAAGAATTTCTTCTCCAAGTACGGAGCAGTGGTTGAGCACCAGATTATACGCGATCATGAGACCAATCGTTCTCGGGGTTTTGGATTTGTTATATTTGACAGTGAAGAAGTTGTTGATGAACTGTTATCCAATGGAAATATGATTGATATGGCAGGTACTCAGGTGAGCTTAGTAGCATCCCAGGAAAAACTATATGTAAAGCATCATGCGTTTTTCACCGCTTGTGCTGCACATTACTTCTATGTGGAGGTGAAGAAAGCAGAACCAAAGAAATCCTCAAACCAACCACCTGCTCCTGCATATGGTAGCAAGTCTAGGGCTCGTTCTTTCAGTGATGACTTTGGGGGTTTTGGCAACTCCTATGGTGGTTTTGATGGCGGCTTTGGCCCAGGTCCCTATAGGACCCCTGGGGGTTTTGGTAGGCTTGGTGGAGGATATGGTGGGTATGGTGGTGGTAGTGAATTTGGTGGGTATGGTGATTATGGCAGCAGTGCTCTAGGAGCATACAGAGGTGAATCTTCCCTTGGGTATACTAGTCGCTTTGGAACTTATGGCGGTGGGTTTGGTGGTGGCTATGGCGGTGGCAGTGGATTAGGTGGTTATGGCCGTGGCGAGGGCTATGGCAGCTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGGCTATGGTGGCGGTTATGATTCTGGACCTGGTGCAAGTTATGGTGGAACAGGAGGCCTTTACGGTAGGGGAGGAGGCGGCTATGGTGGTGGCAGTAGTCGGTACCATCCTTATGCAAGGTAG

Network for GWHGAAZE002964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	7	59	4.50E-09
PF00076.23	RRM_1	80	140	3.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.165
	SRR3591706	second leaf	17.796
	SRR3591707	mature leaf	15.655
	SRR3591708	Shoot apex	48.433
	SRR3591709	Stem	32.106
	SRR3591710	White floral bud	26.540
	SRR3591711	White flower	39.617
	SRR3591712	Green floral bud	34.901
	SRR3591713	Yellow flower	35.340
SRP173429	SRR8316895	Juvenile bud stage	23.732
	SRR8316896	Juvenile bud stage	35.593
	SRR8316897	Juvenile bud stage	15.818
	SRR8316894	Third green stage	14.758
	SRR8316900	Third green stage	39.206
	SRR8316901	Third green stage	37.786
	SRR8316898	Complete white stage	9.093
	SRR8316899	Complete white stage	41.998
	SRR8316903	Complete white stage	19.873
	SRR8316902	Silver flowering stage	10.488
	SRR8316904	Silver flowering stage	14.265
	SRR8316905	Silver flowering stage	7.464
	SRR8316906	Gold flowering stage	30.439
	SRR8316907	Gold flowering stage	27.876
	SRR8316908	Gold flowering stage	30.279
SRP132670	SRR6706286	Control	36.905
	SRR6706287	Light intensity 50%	35.664
	SRR6706288	Light intensity 20%	39.031
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.400
	CNS0095593	Slightly white alabastrum(diploid) 2	26.403
	CNS0095594	Slightly white alabastrum(diploid) 3	23.079
	CNS0095595	Whole white alabastrum(diploid) 2	21.243
	CNS0095596	Whole white alabastrum(diploid) 3	20.080
	CNS0095597	Whole white alabastrum(diploid) 4	20.918
	CNS0095598	Silvery flower (diploied) 1	26.671
	CNS0095599	Silvery flower (diploied) 2	22.820
	CNS0095600	Silvery flower (diploied) 3	29.508
	CNS0095601	Golden flower (diploid) 1	19.711
	CNS0095602	Golden flower (diploid) 2	28.977
	CNS0095603	Golden flower (diploid) 3	29.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.474
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.876
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.926
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.598
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.910
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.510
	CNS0095610	Silvery flower (tetraploid) 1	29.883
	CNS0095611	Silvery flower (tetraploid) 2	21.767
	CNS0095612	Silvery flower (tetraploid) 3	19.374
	CNS0095613	Golden flower (tetraploid) 1	17.473
	CNS0095614	Golden flower (tetraploid) 2	24.450
	CNS0095615	Golden flower (tetraploid) 3	25.574
CRA001975	CRR073297	Stem 1	22.759
	CRR073298	Stem 2	22.423
	CRR073299	Stem 3	23.979
	CRR073300	Leaf 1	20.190
	CRR073301	Leaf 2	19.309
	CRR073302	Leaf 3	17.815
	CRR073303	Juvenile bud 1	21.742
	CRR073304	Juvenile bud 2	15.535
	CRR073305	Juvenile bud 3	27.654
	CRR073306	Third green 1	9.522
	CRR073307	Third green 2	8.020
	CRR073308	Third green 3	10.153
	CRR073309	Second white 1	12.198
	CRR073310	Second white 2	11.162
	CRR073311	Second white 3	12.125
	CRR073312	Silver flowering 1	11.143
	CRR073313	Silver flowering 2	11.309
	CRR073314	Silver flowering 3	11.651
	CRR073315	Gold flowering 1	14.101
	CRR073316	Gold flowering 2	19.517
	CRR073317	Gold flowering 3	20.278
	CRR073318	Tawny withering 1	14.838
	CRR073319	Tawny withering 2	18.386
	CRR073320	Tawny withering 3	17.665