Detail information of GWHGAAZE002960


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13697.10unnamed protein product [Coffea canephora]
COGYP_003669636.13E-32RNA polymerase insert
Swissprottr|Q39211|NRPB3_ARATH5E-37DNA-directed RNA polymerases II, IV and V subunit 3
trEMBLtr|A0A068UZJ9|A0A068UZJ9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313|EMBL:CDP13697.1}
TAIR10AT1G60620.11E-132RNA polymerase I subunit 43

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8924799589252830-
GWHAAZE00000001mRNA8924799589252830-
GWHAAZE00000001exon8924799589248098-
GWHAAZE00000001exon8924842489248540-
GWHAAZE00000001exon8924864889248741-
GWHAAZE00000001exon8924886389248958-
GWHAAZE00000001exon8925087989251075-
GWHAAZE00000001exon8925120289251282-
GWHAAZE00000001exon8925142789251556-
GWHAAZE00000001exon8925244289252627-
GWHAAZE00000001exon8925274789252830-
GWHAAZE00000001CDS8925274789252830-
GWHAAZE00000001CDS8925244289252627-
GWHAAZE00000001CDS8925142789251556-
GWHAAZE00000001CDS8925120289251282-
GWHAAZE00000001CDS8925087989251075-
GWHAAZE00000001CDS8924886389248958-
GWHAAZE00000001CDS8924864889248741-
GWHAAZE00000001CDS8924842489248540-
GWHAAZE00000001CDS8924799589248098-
Transcript Sequence

Network for GWHGAAZE002960

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01193.25RNA_pol_L693541.90E-26
PF01000.27RNA_pol_A_bac992461.80E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03027RPC40, POLR1C RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
GO:0046983molecular_functionprotein dimerization activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.181
SRR3591706second leaf9.792
SRR3591707mature leaf9.682
SRR3591708Shoot apex26.183
SRR3591709Stem15.426
SRR3591710White floral bud14.140
SRR3591711White flower27.432
SRR3591712Green floral bud20.757
SRR3591713Yellow flower23.612
SRP173429 SRR8316895Juvenile bud stage 14.588
SRR8316896Juvenile bud stage 19.703
SRR8316897Juvenile bud stage 9.076
SRR8316894Third green stage 7.066
SRR8316900Third green stage 21.814
SRR8316901Third green stage 20.841
SRR8316898Complete white stage 4.219
SRR8316899Complete white stage 25.785
SRR8316903Complete white stage 7.244
SRR8316902Silver flowering stage8.503
SRR8316904Silver flowering stage9.235
SRR8316905Silver flowering stage3.881
SRR8316906Gold flowering stage 15.782
SRR8316907Gold flowering stage 14.233
SRR8316908Gold flowering stage 13.855
SRP132670SRR6706286Control18.739
SRR6706287Light intensity 50%16.714
SRR6706288Light intensity 20%18.682
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.420
CNS0095593Slightly white alabastrum(diploid) 218.004
CNS0095594Slightly white alabastrum(diploid) 316.789
CNS0095595Whole white alabastrum(diploid) 213.355
CNS0095596Whole white alabastrum(diploid) 314.551
CNS0095597Whole white alabastrum(diploid) 413.125
CNS0095598Silvery flower (diploied) 116.832
CNS0095599Silvery flower (diploied) 215.142
CNS0095600Silvery flower (diploied) 313.854
CNS0095601Golden flower (diploid) 111.365
CNS0095602Golden flower (diploid) 212.452
CNS0095603Golden flower (diploid) 312.194
CNS0095604Slightly white alabastrum(tetraploid) 114.969
CNS0095605Slightly white alabastrum(tetraploid) 215.091
CNS0095606Slightly white alabastrum(tetraploid) 323.429
CNS0095607Whole white alabastrum(tetraploid) 19.313
CNS0095608Whole white alabastrum(tetraploid) 27.523
CNS0095609Whole white alabastrum(tetraploid) 317.721
CNS0095610Silvery flower (tetraploid) 115.590
CNS0095611Silvery flower (tetraploid) 215.294
CNS0095612Silvery flower (tetraploid) 39.236
CNS0095613Golden flower (tetraploid) 16.369
CNS0095614Golden flower (tetraploid) 212.501
CNS0095615Golden flower (tetraploid) 34.784
CRA001975CRR073297Stem 119.520
CRR073298Stem 218.912
CRR073299Stem 318.771
CRR073300Leaf 118.991
CRR073301Leaf 220.150
CRR073302Leaf 322.058
CRR073303Juvenile bud 127.655
CRR073304Juvenile bud 210.686
CRR073305Juvenile bud 320.504
CRR073306Third green 12.440
CRR073307Third green 22.082
CRR073308Third green 33.088
CRR073309Second white 16.324
CRR073310Second white 27.660
CRR073311Second white 35.906
CRR073312Silver flowering 14.933
CRR073313Silver flowering 24.598
CRR073314Silver flowering 36.450
CRR073315Gold flowering 113.527
CRR073316Gold flowering 217.211
CRR073317Gold flowering 35.555
CRR073318Tawny withering 121.258
CRR073319Tawny withering 222.930
CRR073320Tawny withering 324.392