Gene detail

Detail information of GWHGAAZE002958

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN14413.1	1.2042E-175	Protein kinase G11A [Glycine soja]
COG	YP_003341359.1	4E-12	serine/threonine protein kinase
Swissprot	tr\|Q39183\|D6KL2_ARATH	5E-166	Serine/threonine-protein kinase D6PKL2
trEMBL	tr\|M5XAC8\|M5XAC8_PRUPE	5E-176	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15995.1}
TAIR10	AT5G47750.1	4E-135	D6 protein kinase like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89240776	89241603	-
GWHAAZE00000001	mRNA	89240776	89241603	-
GWHAAZE00000001	exon	89240776	89241603	-
GWHAAZE00000001	CDS	89240776	89241603	-

Transcript Sequence
>GWHTAAZE002962 ATGCTCGGAATTGTCTACCGTGACCTAAAGCCTGAAAATGTCCTTGTTAGAGAAGATGGACACATAATGCTATCCGACTTTGACCTCTCCCTCCGCTGTACTGTCAGTCCTACACTAGTCAGATCTTCATCCTTGGAGACTGAGCCCCTTCGAAGGAACACCGGTTACTGTGTTCAGCCCTCTTGTATCGAGCCGCCTTCTTGTATACAGCCCTCTTGTGTGGCCCCCACCACATGTTTCTCCCCCCGCCTGTTTTTGGGTAAATCCAAGAAAGACCGGAAGCCCAAGAATGAAATTGGTAATCAAGTCAGTCCACTGCCCGAGCTTATGGCTGAGCCAACCGGGGCCCGCTCGATGTCATTTGTTGGAACCCACGAGTACTTGGCACCCGAAATCATCAAAGGTGAAGGGCATGGAAGCGCTGTGGATTGGTGGACTTTCGGGATTTTCTTGTACGAGTTATTGTTCGGTAAGACCCCTTTCAAGGGATCAGGGAATCGGGCCACCCTGTTCAATGTTGTGGGCCAGCCTCTGCGGTTCCCAGAGTCGCCAGGTGTGAGCTTTGCAGCTAGGGATCTGATAAGAGGTTTGCTAGTAAAAGAGCCACAGCAAAGGTTGGCCTTCAAACGAGGTGCCACAGAAATCAAACAACATCCCTTCTTTGAAGGCGTAAATTGGGCTTTGATTCGTTGTGCGAGTCCACCAGAGATTCCAAAACCAGTGGAGATTCCATCCCCGACGGCGTCGACTAGTGGGAAAGTTGCTGTTGCACCTATTATGCCTGAGAAGAAGGGTTCTGATAACTATCTTGAATTTGATTTCTTTTAA

Network for GWHGAAZE002958

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	3	35	8.50E-08
PF00069.26	Pkinase	118	221	4.00E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.214
	SRR3591706	second leaf	52.946
	SRR3591707	mature leaf	37.542
	SRR3591708	Shoot apex	76.515
	SRR3591709	Stem	101.507
	SRR3591710	White floral bud	87.405
	SRR3591711	White flower	71.303
	SRR3591712	Green floral bud	86.146
	SRR3591713	Yellow flower	39.211
SRP173429	SRR8316895	Juvenile bud stage	48.064
	SRR8316896	Juvenile bud stage	75.521
	SRR8316897	Juvenile bud stage	29.664
	SRR8316894	Third green stage	27.930
	SRR8316900	Third green stage	73.550
	SRR8316901	Third green stage	83.146
	SRR8316898	Complete white stage	38.835
	SRR8316899	Complete white stage	130.297
	SRR8316903	Complete white stage	60.623
	SRR8316902	Silver flowering stage	22.790
	SRR8316904	Silver flowering stage	24.219
	SRR8316905	Silver flowering stage	12.489
	SRR8316906	Gold flowering stage	28.595
	SRR8316907	Gold flowering stage	32.978
	SRR8316908	Gold flowering stage	30.172
SRP132670	SRR6706286	Control	75.598
	SRR6706287	Light intensity 50%	81.536
	SRR6706288	Light intensity 20%	76.609
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.333
	CNS0095593	Slightly white alabastrum(diploid) 2	89.176
	CNS0095594	Slightly white alabastrum(diploid) 3	74.664
	CNS0095595	Whole white alabastrum(diploid) 2	68.408
	CNS0095596	Whole white alabastrum(diploid) 3	56.785
	CNS0095597	Whole white alabastrum(diploid) 4	64.905
	CNS0095598	Silvery flower (diploied) 1	62.874
	CNS0095599	Silvery flower (diploied) 2	45.217
	CNS0095600	Silvery flower (diploied) 3	56.911
	CNS0095601	Golden flower (diploid) 1	51.656
	CNS0095602	Golden flower (diploid) 2	48.606
	CNS0095603	Golden flower (diploid) 3	50.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.723
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.757
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.570
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.195
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.791
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.399
	CNS0095610	Silvery flower (tetraploid) 1	48.849
	CNS0095611	Silvery flower (tetraploid) 2	43.200
	CNS0095612	Silvery flower (tetraploid) 3	83.592
	CNS0095613	Golden flower (tetraploid) 1	21.915
	CNS0095614	Golden flower (tetraploid) 2	31.982
	CNS0095615	Golden flower (tetraploid) 3	12.522
CRA001975	CRR073297	Stem 1	131.555
	CRR073298	Stem 2	117.642
	CRR073299	Stem 3	110.962
	CRR073300	Leaf 1	181.146
	CRR073301	Leaf 2	180.041
	CRR073302	Leaf 3	113.798
	CRR073303	Juvenile bud 1	170.878
	CRR073304	Juvenile bud 2	167.468
	CRR073305	Juvenile bud 3	228.425
	CRR073306	Third green 1	159.091
	CRR073307	Third green 2	183.262
	CRR073308	Third green 3	159.719
	CRR073309	Second white 1	49.223
	CRR073310	Second white 2	37.502
	CRR073311	Second white 3	34.040
	CRR073312	Silver flowering 1	31.024
	CRR073313	Silver flowering 2	30.840
	CRR073314	Silver flowering 3	23.198
	CRR073315	Gold flowering 1	73.163
	CRR073316	Gold flowering 2	87.014
	CRR073317	Gold flowering 3	79.303
	CRR073318	Tawny withering 1	121.906
	CRR073319	Tawny withering 2	104.088
	CRR073320	Tawny withering 3	128.336