Gene detail

Detail information of GWHGAAZE002947

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009784552.1	0	PREDICTED: probable L-type lectin-domain containing receptor kinase S.7 [Nicotiana sylvestris]
COG	NP_864945.1	2E-14	glucosesorbosone dehydrogenase
Swissprot	tr\|Q9FHG4\|LRKS7_ARATH	0	Probable L-type lectin-domain containing receptor kinase S.7 (Precursor)
trEMBL	tr\|A5BKV1\|A5BKV1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN76998.1}
TAIR10	AT5G55830.1	1E-140	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89077315	89078586	+
GWHAAZE00000001	mRNA	89077315	89078586	+
GWHAAZE00000001	exon	89077315	89078586	+
GWHAAZE00000001	CDS	89077315	89078586	+

Transcript Sequence
>GWHTAAZE002951 ATGAAGAATTCAAGAAACCACCTTGTTTTCTCCCTGTTCTTCTTTCTCTCTTTCCCTTCACTTTCATCCTCCCAAAACGTCACCTTCAACTTCCCCTCCTTCACTCTCCAAAACTTTACTCTCCTAGGCGACTCTTACCTCCGAAACGGTGTCGTCGGCCTCACCCGGAACCTCCCCGTCCCCTCCTCAACCTCCGGCACCGTAATCTACAACCACCCAATTCCCTTCTTCGACCCACTATCCAACTCCACCGCTTCTTTCTCAACCCAATTCTCTTTCTCCATTGCCAATCTCAATCCTACCTCGTTTGGTGATGGGTTAGCCTTCTTTCTCTCCCCTAATAACCAAACCCTAGGTAGCCCCGGCGGGTATTTGGGTCTTGTCAATTCCACCCAATTCACCAAGAACAAGTTTGTGGCTGTGGAATTTGATACTTTTCTTGATTTGCATTTCAATGACCCTAATGACAATCACGTTGGATTGGACATTGATAGCCTCAATTCCATCAAGACAGCTAAGGTAGACTCTACTGGAATTGATCTTAAGAGTGGGGATTCGATTACTGCCTGGATTGATTACAAGAATGAGGAACGGAAATTGAGAGTTTTCTTGAGTAAAAAGGTTAGTTACAAGCCTGAAGACCCTCTTCTCGTTGTTAATATTGATCTTTCTGGCTATCTTAAGGAGTTTAACTATGTGGGTTTTTCTGCTTCAACTGAGGGAAGCACTGAGGTTCATTTGATTGAGAATTGGAGCTTTAAGACTTATGGATATCGCCCTTTGAGACCCAGAATTAATCCTCACAATGTGTCTGATAATTCGGTGATCTTAAGCCCCCCACAGATTACGGTTTCTGATTCCAACCATAAGCATCACAAGAAGCTTGTTTTGGGTCTTGGGATTAGTGGCCCGGCCTTGTTTTGTGTTGTGTTTGTGTTGTTTGGTTGGATTTTGGTCAAAAGATGGAAGGGGGTAACAACTGTAAAGAGCTTGAAAGCAGAGCTTGTAACAGGACCAAGACAATTCAGTTACAAAGAGCTTAAGTCAGCCACAAAAGGGTTTCACTCCAGTAGGATTGTTGGCCACGGAACATTCGGCTATGTTTACAAGGCCTTCTTCATGGGTTCGGGTACTATGTCTGCTGTGAAAAGATCAAAGCATTCCCACGAAGGCAAAACCGAGTTCTTAGCAGAATTGTCCATCATAGCATGTTTGAGGCACAAGAACTTAGTTCAGCTCCAAGGTTGGTGCGTTGAAAAGGGAGAATTACTG

Network for GWHGAAZE002947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	27	257	6.20E-66
PF00069.26	Pkinase	354	422	2.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.196
	SRR3591706	second leaf	1.810
	SRR3591707	mature leaf	1.694
	SRR3591708	Shoot apex	4.731
	SRR3591709	Stem	1.690
	SRR3591710	White floral bud	1.952
	SRR3591711	White flower	2.660
	SRR3591712	Green floral bud	1.872
	SRR3591713	Yellow flower	1.782
SRP173429	SRR8316895	Juvenile bud stage	1.623
	SRR8316896	Juvenile bud stage	1.875
	SRR8316897	Juvenile bud stage	0.693
	SRR8316894	Third green stage	1.537
	SRR8316900	Third green stage	1.303
	SRR8316901	Third green stage	1.264
	SRR8316898	Complete white stage	0.919
	SRR8316899	Complete white stage	2.488
	SRR8316903	Complete white stage	2.388
	SRR8316902	Silver flowering stage	0.900
	SRR8316904	Silver flowering stage	1.242
	SRR8316905	Silver flowering stage	0.610
	SRR8316906	Gold flowering stage	1.208
	SRR8316907	Gold flowering stage	1.414
	SRR8316908	Gold flowering stage	1.520
SRP132670	SRR6706286	Control	1.918
	SRR6706287	Light intensity 50%	1.790
	SRR6706288	Light intensity 20%	1.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.800
	CNS0095593	Slightly white alabastrum(diploid) 2	1.012
	CNS0095594	Slightly white alabastrum(diploid) 3	1.514
	CNS0095595	Whole white alabastrum(diploid) 2	0.471
	CNS0095596	Whole white alabastrum(diploid) 3	0.137
	CNS0095597	Whole white alabastrum(diploid) 4	1.276
	CNS0095598	Silvery flower (diploied) 1	2.430
	CNS0095599	Silvery flower (diploied) 2	1.748
	CNS0095600	Silvery flower (diploied) 3	2.961
	CNS0095601	Golden flower (diploid) 1	2.620
	CNS0095602	Golden flower (diploid) 2	2.538
	CNS0095603	Golden flower (diploid) 3	3.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.317
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.135
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.307
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.366
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.802
	CNS0095610	Silvery flower (tetraploid) 1	1.483
	CNS0095611	Silvery flower (tetraploid) 2	2.107
	CNS0095612	Silvery flower (tetraploid) 3	2.355
	CNS0095613	Golden flower (tetraploid) 1	0.925
	CNS0095614	Golden flower (tetraploid) 2	1.547
	CNS0095615	Golden flower (tetraploid) 3	1.335
CRA001975	CRR073297	Stem 1	2.557
	CRR073298	Stem 2	2.436
	CRR073299	Stem 3	2.468
	CRR073300	Leaf 1	1.380
	CRR073301	Leaf 2	1.346
	CRR073302	Leaf 3	0.257
	CRR073303	Juvenile bud 1	1.266
	CRR073304	Juvenile bud 2	0.855
	CRR073305	Juvenile bud 3	1.352
	CRR073306	Third green 1	0.670
	CRR073307	Third green 2	1.042
	CRR073308	Third green 3	1.115
	CRR073309	Second white 1	0.420
	CRR073310	Second white 2	0.808
	CRR073311	Second white 3	0.703
	CRR073312	Silver flowering 1	0.440
	CRR073313	Silver flowering 2	0.275
	CRR073314	Silver flowering 3	0.235
	CRR073315	Gold flowering 1	0.263
	CRR073316	Gold flowering 2	0.898
	CRR073317	Gold flowering 3	1.264
	CRR073318	Tawny withering 1	2.125
	CRR073319	Tawny withering 2	0.917
	CRR073320	Tawny withering 3	2.063