Gene detail

Detail information of GWHGAAZE002943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003523765.1	0	PREDICTED: 26S protease regulatory subunit 10B homolog A-like isoform 1 [Glycine max]
COG	NP_275871.1	1E-121	proteasome-activating nucleotidase
Swissprot	tr\|Q9SEI3\|PS10A_ARATH	0	26S protease regulatory subunit 10B homolog A
trEMBL	tr\|A0A072VDE6\|A0A072VDE6_MEDTR	0	26S proteasome regulatory particle triple-A ATPase protein {ECO:0000313\|EMBL:KEH36195.1}
TAIR10	AT5G43010.1	0	regulatory particle triple-A ATPase 4A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89017341	89019831	-
GWHAAZE00000001	mRNA	89017341	89019831	-
GWHAAZE00000001	exon	89019714	89019831	-
GWHAAZE00000001	exon	89019417	89019553	-
GWHAAZE00000001	exon	89019162	89019323	-
GWHAAZE00000001	exon	89018952	89019038	-
GWHAAZE00000001	exon	89018762	89018848	-
GWHAAZE00000001	exon	89018503	89018640	-
GWHAAZE00000001	exon	89018129	89018320	-
GWHAAZE00000001	exon	89017942	89018040	-
GWHAAZE00000001	exon	89017341	89017670	-
GWHAAZE00000001	CDS	89019714	89019831	-
GWHAAZE00000001	CDS	89019417	89019553	-
GWHAAZE00000001	CDS	89019162	89019323	-
GWHAAZE00000001	CDS	89018952	89019038	-
GWHAAZE00000001	CDS	89018762	89018848	-
GWHAAZE00000001	CDS	89018503	89018640	-
GWHAAZE00000001	CDS	89018129	89018320	-
GWHAAZE00000001	CDS	89017942	89018040	-
GWHAAZE00000001	CDS	89017596	89017670	-
GWHAAZE00000001	three_prime_UTR	89017341	89017595	-

Transcript Sequence
>GWHTAAZE002947 AGAGATAGTTTGCGGGCCACAAAAAAGGAATACGATAAAACAGAAGATGATTTGAAGTCATTTCAGAGTGTTGGACAGATCATAGGCGAAGTTATCACGCCTCTGGATAATGAATGCTTGATAGTTAAAACCAGTAGTGGCCCAAGGTATGAGGTTGGCTGCCGCAGTAAGGTGGACAAGGAAAAATTAACATCAGGCACTAGAGTGGTTCTTGATATGACTACTCTTACTATTATGCGAGCTCTCCCCCGTGAAGTCGATCCAGTTGTATATAATATGCTTCATGAAAACCCTGGTAATGTTAGCTACTCTGCTGTGGGAGGACTATCGGATCAGATCCGTGAACTGAGGGAATCAATAGAATTGCCTCTTATGAATCCTGAGCTCTTCCTAAGGGTGGGTATTAAACCTCCCAAGGGTGTTCTTCTCTATGGACCCCCTGGAACCGGCAAGACATTATTAGCTAGGGCAATTGCTAGCAACATAGATGCCAGTTTCTTAAAGGTCGTGTCAAGTGCCATAATTGATAAATATATTGGTGAGAGTGCACGATTGATCCGAGAGATGTTTTGTTATGCACGTGATCACCAACCCTGTATCATTTTTATGGATGAGATTGATGCCATTGGTGGAAGACGTTTGAGCGAGGGAACTAGTGCTGACCGTGAAATTCAAAGAACTCTCATGGAGTTGCTTAACCAGCTGGATGGATTTGACTCCCTTGGGAAGGTAAAAATGATTATGGCAACAAACCGACCTGATGTTTTGGACCCAGCGCTTCTTCGTCCGGGCAGACTAGACAGGAAAATAGAGATTCTGTTGCCAAACGAACAGTCGAGGATGGAAATCCTCAAAATCCATGCAGCTGGAATAGCCAAACACAGGGAAATTGATTATGAAGCAGTTGTTAAGCTTGCTGAGGGTTTTAATGGTGCTGACCTTCGTAATGTGTGCACTGAAGCTGGTATGGCTGCTATCCGTGCAGAACGAGATTATGTCATCCACGAAGATTTCATGAAGGCTGTTCGGAAGCTCAATGAAGCGAAGAAACTCGAGTCAAGTGCTCATTACAGTGCTGATTTTGGGAAGGATTAAGAACCTAATTCAATTTCAACGAAGCTTATTATCATTATCATAAAGTTTTTCTTTTTATATATATGGGTGGGTTAGCATATTTGTTCCTTAGGATAAATTATTATGAACAATCCATCTCTTAGAAAGAACGTATATTCACCAGCCTTGTTGTTCTGGTAGTGGCAAATCATTCTTTTGAGTCTTGGAGTTGAATATGAAAAATGATCTCCAATGGAAATTTTTTCTTCGTATAATGGTACGAGTCTAATTAATTGT

Network for GWHGAAZE002943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16450.6	Prot_ATP_ID_OB	28	83	2.50E-08
PF00004.30	AAA	141	272	3.90E-41
PF17862.2	AAA_lid_3	297	339	6.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03064	PSMC6, RPT4	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0016787	molecular_function	hydrolase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.603
	SRR3591706	second leaf	0.286
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.319
	SRR3591709	Stem	1.097
	SRR3591710	White floral bud	1.890
	SRR3591711	White flower	1.764
	SRR3591712	Green floral bud	4.704
	SRR3591713	Yellow flower	1.705
SRP173429	SRR8316895	Juvenile bud stage	4.696
	SRR8316896	Juvenile bud stage	9.507
	SRR8316897	Juvenile bud stage	2.980
	SRR8316894	Third green stage	2.827
	SRR8316900	Third green stage	8.895
	SRR8316901	Third green stage	7.334
	SRR8316898	Complete white stage	2.187
	SRR8316899	Complete white stage	5.669
	SRR8316903	Complete white stage	2.409
	SRR8316902	Silver flowering stage	1.359
	SRR8316904	Silver flowering stage	1.577
	SRR8316905	Silver flowering stage	1.049
	SRR8316906	Gold flowering stage	2.763
	SRR8316907	Gold flowering stage	4.537
	SRR8316908	Gold flowering stage	1.585
SRP132670	SRR6706286	Control	5.005
	SRR6706287	Light intensity 50%	4.503
	SRR6706288	Light intensity 20%	4.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.052
	CNS0095593	Slightly white alabastrum(diploid) 2	6.214
	CNS0095594	Slightly white alabastrum(diploid) 3	6.824
	CNS0095595	Whole white alabastrum(diploid) 2	5.701
	CNS0095596	Whole white alabastrum(diploid) 3	6.627
	CNS0095597	Whole white alabastrum(diploid) 4	5.871
	CNS0095598	Silvery flower (diploied) 1	1.679
	CNS0095599	Silvery flower (diploied) 2	1.557
	CNS0095600	Silvery flower (diploied) 3	5.456
	CNS0095601	Golden flower (diploid) 1	2.706
	CNS0095602	Golden flower (diploid) 2	3.050
	CNS0095603	Golden flower (diploid) 3	3.554
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.784
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.552
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.814
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.730
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.160
	CNS0095610	Silvery flower (tetraploid) 1	8.714
	CNS0095611	Silvery flower (tetraploid) 2	8.734
	CNS0095612	Silvery flower (tetraploid) 3	8.551
	CNS0095613	Golden flower (tetraploid) 1	4.388
	CNS0095614	Golden flower (tetraploid) 2	6.970
	CNS0095615	Golden flower (tetraploid) 3	3.096
CRA001975	CRR073297	Stem 1	6.643
	CRR073298	Stem 2	6.170
	CRR073299	Stem 3	5.164
	CRR073300	Leaf 1	6.427
	CRR073301	Leaf 2	6.312
	CRR073302	Leaf 3	7.028
	CRR073303	Juvenile bud 1	5.548
	CRR073304	Juvenile bud 2	7.277
	CRR073305	Juvenile bud 3	4.324
	CRR073306	Third green 1	2.791
	CRR073307	Third green 2	1.113
	CRR073308	Third green 3	2.428
	CRR073309	Second white 1	2.646
	CRR073310	Second white 2	3.810
	CRR073311	Second white 3	2.875
	CRR073312	Silver flowering 1	1.276
	CRR073313	Silver flowering 2	0.981
	CRR073314	Silver flowering 3	2.543
	CRR073315	Gold flowering 1	0.887
	CRR073316	Gold flowering 2	1.835
	CRR073317	Gold flowering 3	0.458
	CRR073318	Tawny withering 1	2.681
	CRR073319	Tawny withering 2	2.800
	CRR073320	Tawny withering 3	5.441