Detail information of GWHGAAZE002927


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006452562.12.92888E-71hypothetical protein CICLE_v10009615mg [Citrus clementina]
COGYP_007081496.13E-4230S ribosomal protein S10
Swissprottr|Q9M4Y3|RR10_MESCR4E-7330S ribosomal protein S10, chloroplastic (Precursor)
trEMBLtr|V4UI67|V4UI67_9ROSI1E-71Uncharacterized protein {ECO:0000313|EMBL:ESR65802.1}
TAIR10AT3G13120.22E-56Ribosomal protein S10p/S20e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8879552388795834-
GWHAAZE00000001mRNA8879552388795834-
GWHAAZE00000001exon8879552388795834-
GWHAAZE00000001CDS8879552388795834-
Transcript Sequence

Network for GWHGAAZE002927

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00338.23Ribosomal_S1081024.40E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02946RP-S10, MRPS10, rpsJ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf114.326
SRR3591706second leaf263.400
SRR3591707mature leaf178.429
SRR3591708Shoot apex291.954
SRR3591709Stem61.638
SRR3591710White floral bud83.930
SRR3591711White flower123.818
SRR3591712Green floral bud101.680
SRR3591713Yellow flower170.060
SRP173429 SRR8316895Juvenile bud stage 99.722
SRR8316896Juvenile bud stage 109.404
SRR8316897Juvenile bud stage 68.252
SRR8316894Third green stage 44.550
SRR8316900Third green stage 153.100
SRR8316901Third green stage 137.839
SRR8316898Complete white stage 39.258
SRR8316899Complete white stage 93.769
SRR8316903Complete white stage 56.407
SRR8316902Silver flowering stage42.346
SRR8316904Silver flowering stage42.695
SRR8316905Silver flowering stage27.410
SRR8316906Gold flowering stage 98.022
SRR8316907Gold flowering stage 104.383
SRR8316908Gold flowering stage 101.946
SRP132670SRR6706286Control138.004
SRR6706287Light intensity 50%111.079
SRR6706288Light intensity 20%116.993
CNP0000432CNS0095592Slightly white alabastrum(diploid) 196.465
CNS0095593Slightly white alabastrum(diploid) 272.667
CNS0095594Slightly white alabastrum(diploid) 363.635
CNS0095595Whole white alabastrum(diploid) 268.522
CNS0095596Whole white alabastrum(diploid) 368.133
CNS0095597Whole white alabastrum(diploid) 453.589
CNS0095598Silvery flower (diploied) 1126.079
CNS0095599Silvery flower (diploied) 292.468
CNS0095600Silvery flower (diploied) 397.844
CNS0095601Golden flower (diploid) 1101.759
CNS0095602Golden flower (diploid) 295.837
CNS0095603Golden flower (diploid) 393.036
CNS0095604Slightly white alabastrum(tetraploid) 167.874
CNS0095605Slightly white alabastrum(tetraploid) 276.919
CNS0095606Slightly white alabastrum(tetraploid) 3123.604
CNS0095607Whole white alabastrum(tetraploid) 135.699
CNS0095608Whole white alabastrum(tetraploid) 243.538
CNS0095609Whole white alabastrum(tetraploid) 3107.081
CNS0095610Silvery flower (tetraploid) 1113.264
CNS0095611Silvery flower (tetraploid) 2116.349
CNS0095612Silvery flower (tetraploid) 3115.262
CNS0095613Golden flower (tetraploid) 1117.640
CNS0095614Golden flower (tetraploid) 2119.040
CNS0095615Golden flower (tetraploid) 3121.382
CRA001975CRR073297Stem 1144.014
CRR073298Stem 2124.264
CRR073299Stem 3163.019
CRR073300Leaf 182.732
CRR073301Leaf 2110.025
CRR073302Leaf 394.590
CRR073303Juvenile bud 185.595
CRR073304Juvenile bud 279.941
CRR073305Juvenile bud 367.654
CRR073306Third green 155.914
CRR073307Third green 229.784
CRR073308Third green 344.193
CRR073309Second white 159.454
CRR073310Second white 240.601
CRR073311Second white 333.426
CRR073312Silver flowering 140.585
CRR073313Silver flowering 240.244
CRR073314Silver flowering 337.015
CRR073315Gold flowering 1235.748
CRR073316Gold flowering 2255.416
CRR073317Gold flowering 3170.309
CRR073318Tawny withering 160.665
CRR073319Tawny withering 278.732
CRR073320Tawny withering 357.158