Gene detail

Detail information of GWHGAAZE002912

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007214669.1	0	hypothetical protein PRUPE_ppa003305mg [Prunus persica]
Swissprot	tr\|Q93WV0\|WRK20_ARATH	3E-175	Probable WRKY transcription factor 20
trEMBL	tr\|M5X2W2\|M5X2W2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15868.1}
TAIR10	AT4G26640.2	2E-144	WRKY family transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88468309	88476202	+
GWHAAZE00000001	mRNA	88468309	88476202	+
GWHAAZE00000001	exon	88468309	88468554	+
GWHAAZE00000001	exon	88469466	88469648	+
GWHAAZE00000001	exon	88470907	88471456	+
GWHAAZE00000001	exon	88471545	88471701	+
GWHAAZE00000001	exon	88471789	88471947	+
GWHAAZE00000001	exon	88475716	88476202	+
GWHAAZE00000001	CDS	88468309	88468554	+
GWHAAZE00000001	CDS	88469466	88469648	+
GWHAAZE00000001	CDS	88470907	88471456	+
GWHAAZE00000001	CDS	88471545	88471701	+
GWHAAZE00000001	CDS	88471789	88471947	+
GWHAAZE00000001	CDS	88475716	88476202	+

Transcript Sequence
>GWHTAAZE002916 ATGGAGGAACACTCTCACTTTCACTCTCGCTCCAATGTCGACGACAGTAGTCACGTGATTTACCCTCCCGACCATCACGTGCGAGATCCGAATTCGGACTCCGTCGCCGGAGGGTCCAACGGTGCAAGGTACAAGCTCATGTCACCTGCTAAACTCCCGATCTCCAGGTCCCCTTGCATCACCATCCCTCCCGGTCTCAGTCCCACCTCCTTTCTCGAGTCTCCTGTTCTTCTCTCCAACATCAAGGCAGAGCCTTCTCCAACTACAGGTTCTTTTTTCAAGCCTCAAATGATGAACGGCTCTGGTTTCTCATCAACCACTAATTGTTCAAGTCGCAATACTTTTGGTGAAAGAAGTTCCAGCTGCTTTGAGTTTAAACCCTACAGTCAATCTAATTCCGTTTCAGTATTATCATCGTCTGGCTTCCCGGTTTCTACAGGTTACAATAACCATCGCAGTGAACAATGTGTAAAAGTCCAAGATCAATGCCATTCTCAGTCATACGCATCACTGCCTATGGTAAACTGTGACATGGCAGCCTCAAAGGAAGTGAGTTTATCTGCACCTCTGAACGCGCTTGGTCCGCGGGTTAGTGTATCTGCTGGTGCAGATAATGATGAAATAAACCAGCGAGGGCAACCTAAATTTGGTGGTCAAGCATCACAAACTGATCACAAGGATACCGGTCCTTCATTTGCAGCTGACAGGTCATCAGAAGACGGATATAATTGGCGAAAGTACGGGCAGAAAATTGTTAAAGGGAGTGAATTCCCACGAAGCTATTACAAATGTACTCATCCTAACTGCGAGGTGAAAAAGATCTTTGAACGCGCTCACGATGGACATATTACAGAGATTGTTTATAAGGGCTCGCATGATCATCCTAAACCTCAACCTAGCCGTCGATTTACTGCTGGTGCTCTTATGTCGATCCAAGAAGAAAAGACCGACAAGGTTTCATCTTTATCATGTCAAGAAGGCCAATCTACCATTAATGCCCAGACTCCCAATACGGAGTCAAATGGCACACCTGTACCATCTCCTAAACAAGCAAATGATGATAGTGCAGATGGCGCAGTTTCACAAATGAACATCAACGACGAGGTTGACGAAGATGATCCATTTTCAAAGCGGAGGAGGACAGAGGTTGGTGGCTATGATGTCACACCAGTGGTGAAACCCATACGCGAACCACGCGTTGTTGTTCAAACTGTGAGTGAGGTTGACATACTTGATGATGGATATAGGTGGCGTAAATATGGCCAGAAAGTGGTCCGAGGCAATCCAAATCCCAGGAGCTATTACAAGTGCACAAATGCTGGATGCCCCGTTAGGAAACACGTGGAAAGAGCCTCCCATGACCCTAAAGCAGTTATAACTACGTACGAGGGAAAACACAATCATGACGTTCCTACTGCAAAGAATAGTAGTGGCAGCCACGACCCAGCTGTACCCATGCCCCCAAACGGAATGTCAAGGATTATGAGACAGGAAGAGAATAATGACACAATTAGCCTTGATCTTGGGGTTGGGATCAGCTATGGTGCTGAAAATAGAACCAACGAGCAACAACAGATACTGGATCCTGAACCCGTCCAATCACAAGGGTACATTACGGGTTCCAATCTCAAAGCAGTTCAAGCGTCTCCAGTCTCTATATGTTATGGTGTTATAAATGGCGGTATGAATATGTATGGTTCTAAGGAAAATCACGTTGTTGAAGGCCACCATTCTTCAAACCAGTACCCTCAAAATCTTGGAAGAGTACTTTTAGGTCCGTAA

Network for GWHGAAZE002912

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	239	295	1.60E-23
PF03106.16	WRKY	412	469	1.50E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.556
	SRR3591706	second leaf	15.292
	SRR3591707	mature leaf	16.329
	SRR3591708	Shoot apex	20.944
	SRR3591709	Stem	19.486
	SRR3591710	White floral bud	13.296
	SRR3591711	White flower	17.921
	SRR3591712	Green floral bud	16.960
	SRR3591713	Yellow flower	12.667
SRP173429	SRR8316895	Juvenile bud stage	7.722
	SRR8316896	Juvenile bud stage	12.410
	SRR8316897	Juvenile bud stage	4.131
	SRR8316894	Third green stage	5.301
	SRR8316900	Third green stage	11.165
	SRR8316901	Third green stage	12.297
	SRR8316898	Complete white stage	3.398
	SRR8316899	Complete white stage	14.110
	SRR8316903	Complete white stage	8.217
	SRR8316902	Silver flowering stage	4.334
	SRR8316904	Silver flowering stage	7.322
	SRR8316905	Silver flowering stage	3.371
	SRR8316906	Gold flowering stage	14.139
	SRR8316907	Gold flowering stage	11.781
	SRR8316908	Gold flowering stage	15.447
SRP132670	SRR6706286	Control	16.959
	SRR6706287	Light intensity 50%	17.056
	SRR6706288	Light intensity 20%	16.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.884
	CNS0095593	Slightly white alabastrum(diploid) 2	11.261
	CNS0095594	Slightly white alabastrum(diploid) 3	8.037
	CNS0095595	Whole white alabastrum(diploid) 2	10.845
	CNS0095596	Whole white alabastrum(diploid) 3	6.971
	CNS0095597	Whole white alabastrum(diploid) 4	7.714
	CNS0095598	Silvery flower (diploied) 1	17.786
	CNS0095599	Silvery flower (diploied) 2	10.974
	CNS0095600	Silvery flower (diploied) 3	13.358
	CNS0095601	Golden flower (diploid) 1	12.548
	CNS0095602	Golden flower (diploid) 2	19.973
	CNS0095603	Golden flower (diploid) 3	19.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.252
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.849
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.009
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.337
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.792
	CNS0095610	Silvery flower (tetraploid) 1	12.986
	CNS0095611	Silvery flower (tetraploid) 2	14.504
	CNS0095612	Silvery flower (tetraploid) 3	10.116
	CNS0095613	Golden flower (tetraploid) 1	9.085
	CNS0095614	Golden flower (tetraploid) 2	13.669
	CNS0095615	Golden flower (tetraploid) 3	11.461
CRA001975	CRR073297	Stem 1	29.124
	CRR073298	Stem 2	24.426
	CRR073299	Stem 3	23.824
	CRR073300	Leaf 1	22.102
	CRR073301	Leaf 2	26.082
	CRR073302	Leaf 3	21.359
	CRR073303	Juvenile bud 1	21.933
	CRR073304	Juvenile bud 2	15.212
	CRR073305	Juvenile bud 3	24.105
	CRR073306	Third green 1	4.124
	CRR073307	Third green 2	2.740
	CRR073308	Third green 3	5.538
	CRR073309	Second white 1	5.530
	CRR073310	Second white 2	5.309
	CRR073311	Second white 3	6.014
	CRR073312	Silver flowering 1	5.953
	CRR073313	Silver flowering 2	6.678
	CRR073314	Silver flowering 3	5.330
	CRR073315	Gold flowering 1	24.154
	CRR073316	Gold flowering 2	33.764
	CRR073317	Gold flowering 3	24.133
	CRR073318	Tawny withering 1	26.401
	CRR073319	Tawny withering 2	27.406
	CRR073320	Tawny withering 3	23.582