Gene detail

Detail information of GWHGAAZE002910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13750.1	0	unnamed protein product [Coffea canephora]
COG	YP_003267833.1	1E-13	RNP-1 like RNA-binding protein
Swissprot	tr\|Q8W034\|RNP1_ARATH	2E-74	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|A0A068UZ07\|A0A068UZ07_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13750.1}
TAIR10	AT3G07810.1	1E-100	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88446152	88447971	-
GWHAAZE00000001	mRNA	88446152	88447971	-
GWHAAZE00000001	exon	88447720	88447971	-
GWHAAZE00000001	exon	88446152	88447372	-
GWHAAZE00000001	CDS	88447720	88447971	-
GWHAAZE00000001	CDS	88446152	88447372	-

Transcript Sequence
>GWHTAAZE002914 ATGAGAATTCAATGTGGGATTGCAGAAACGATGGAATCGGATCTTGGTAAGCTTTTCATCGGTGGAATTTCCTGGGACACGGATGAGGATCGCCTGAAAGAGTATTTTAGAGCATATGGAGAAGTTGTGGAGGCAGTGATTATGAGAGATCGCACAACCGGCCGTGCTCGTGGCTTTGGTTTTGTGGTCTTTGCTGATCCTGGTGTTGCAGAAAGGGTGGTTATGGAGAAGCACATGATTGATGGTCGAACGGTCGAAGCAAAGAAGGCTGTTCCAAGGGATGATCACCACATAATAAATAGAAACAGCGGCAGCATTCAAGGATCTCCAGGTCCTGGGCGCACCAAAAAGATTTTCGTAGGAGGCTTAGCATCCACAGTCACCGAGGGTGACTTTAAGAAGTACTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTGATGTATGATCACAACACCCAAAGGCCGAGAGGCTTTGGGTTCATCACATATGATTCAGAGGAAGCAGTCGATAGGGTGTTGCACAATACCTTCCATGAACTCAATGGCAAAATGGTTGAGGTCAAGCGAGCCGTTCCCAAAGAGCTCTCTCCGGGGCCCAGTAGGAGCCCCTTGGTAGGGTCCAACTATGGTTTCAGTAGAGCCAATAGCTTATTTAATAGCTATTCTTCTCAGGGATATAATATGGGTGGAATTGGAGGCTATGGAGTCAGAATGGATGGTAGATTTAATCCAGTTGGTAGTGGCCGAACTGGGTTCTCTCCATTTGGTTCGCCCGGTTTCGGAATGGGTGTGAATCTGGAGCCAGGGTTGACTCAGAACTTTGGAGGGGGATCCAACTTTAGCAACAATCTTGGGTACGGGAGGGTTTTGAACCCATATTTTGGTGGCAATTCGAATAGGTACAGCACTCCTATTGGGTATAGTGGTGGCAATAGCCGAAGTAATTCGTTTTTAAGCTCACCAACTCGGAACCTATGGGGAAACAGTGGCCTTAATACTCCTACAAACACTGCTAGTGCTGGTACATATCTGGGATCTGGAAGTGGGAATTTCGGGTTCTTCGGTAATAATGGAACAAATTGGGGTTCAACTGGAATTTCAGCTCAAGGCGGAGGAGGGAGTTCTTCGGGCTATAATACTGGGAATATTGCGTATGGGGGTGGTGAAAATAGTTACGGTTTAGGAGCTGGTGGACTTGGAAGAAGCAGTGGGGCCGGTGTGAACACAACGTCGTCATTTGTTTCCTCGAGTGGTGGTTTTGAGGGGTCTTATGGGGATTTGTATCCTGGCGGTTCAGTGTACGGTGATCCAACCTGGCAGTCTCCATCTTCTGAACTTGACGGTTCTGATTCATTTGGTTATGGGCTTGGCAATGTAGGTGATGTTACTGCTAAAAGTTCCGAGGGTTATGTTGGGAATTACAGTATTGCTAATAGACAATCGAATAGAGGTAATACTACACTGCTCTGA

Network for GWHGAAZE002910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	18	84	2.60E-15
PF00076.23	RRM_1	118	176	8.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.465
	SRR3591706	second leaf	30.181
	SRR3591707	mature leaf	23.331
	SRR3591708	Shoot apex	25.965
	SRR3591709	Stem	73.682
	SRR3591710	White floral bud	113.717
	SRR3591711	White flower	45.042
	SRR3591712	Green floral bud	143.755
	SRR3591713	Yellow flower	34.313
SRP173429	SRR8316895	Juvenile bud stage	22.412
	SRR8316896	Juvenile bud stage	35.004
	SRR8316897	Juvenile bud stage	19.275
	SRR8316894	Third green stage	20.453
	SRR8316900	Third green stage	105.447
	SRR8316901	Third green stage	96.759
	SRR8316898	Complete white stage	35.976
	SRR8316899	Complete white stage	98.904
	SRR8316903	Complete white stage	60.231
	SRR8316902	Silver flowering stage	18.871
	SRR8316904	Silver flowering stage	25.423
	SRR8316905	Silver flowering stage	11.482
	SRR8316906	Gold flowering stage	31.898
	SRR8316907	Gold flowering stage	32.339
	SRR8316908	Gold flowering stage	31.880
SRP132670	SRR6706286	Control	87.569
	SRR6706287	Light intensity 50%	96.109
	SRR6706288	Light intensity 20%	97.851
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.482
	CNS0095593	Slightly white alabastrum(diploid) 2	43.865
	CNS0095594	Slightly white alabastrum(diploid) 3	50.649
	CNS0095595	Whole white alabastrum(diploid) 2	105.744
	CNS0095596	Whole white alabastrum(diploid) 3	117.452
	CNS0095597	Whole white alabastrum(diploid) 4	141.175
	CNS0095598	Silvery flower (diploied) 1	27.752
	CNS0095599	Silvery flower (diploied) 2	21.643
	CNS0095600	Silvery flower (diploied) 3	44.652
	CNS0095601	Golden flower (diploid) 1	14.717
	CNS0095602	Golden flower (diploid) 2	35.481
	CNS0095603	Golden flower (diploid) 3	34.230
	CNS0095604	Slightly white alabastrum(tetraploid) 1	79.135
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.219
	CNS0095607	Whole white alabastrum(tetraploid) 1	126.726
	CNS0095608	Whole white alabastrum(tetraploid) 2	155.911
	CNS0095609	Whole white alabastrum(tetraploid) 3	119.769
	CNS0095610	Silvery flower (tetraploid) 1	46.777
	CNS0095611	Silvery flower (tetraploid) 2	37.634
	CNS0095612	Silvery flower (tetraploid) 3	51.113
	CNS0095613	Golden flower (tetraploid) 1	21.315
	CNS0095614	Golden flower (tetraploid) 2	36.683
	CNS0095615	Golden flower (tetraploid) 3	30.628
CRA001975	CRR073297	Stem 1	62.291
	CRR073298	Stem 2	59.658
	CRR073299	Stem 3	48.815
	CRR073300	Leaf 1	137.848
	CRR073301	Leaf 2	98.663
	CRR073302	Leaf 3	74.706
	CRR073303	Juvenile bud 1	129.272
	CRR073304	Juvenile bud 2	146.312
	CRR073305	Juvenile bud 3	96.545
	CRR073306	Third green 1	85.280
	CRR073307	Third green 2	70.908
	CRR073308	Third green 3	78.684
	CRR073309	Second white 1	34.448
	CRR073310	Second white 2	35.808
	CRR073311	Second white 3	32.213
	CRR073312	Silver flowering 1	33.739
	CRR073313	Silver flowering 2	29.401
	CRR073314	Silver flowering 3	27.088
	CRR073315	Gold flowering 1	32.921
	CRR073316	Gold flowering 2	34.440
	CRR073317	Gold flowering 3	28.923
	CRR073318	Tawny withering 1	78.693
	CRR073319	Tawny withering 2	53.753
	CRR073320	Tawny withering 3	82.385