Detail information of GWHGAAZE002905


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001105391.11.1254E-13140S ribosomal protein S8 [Zea mays]
COGYP_001030947.12E-1130S ribosomal protein S8e
Swissprottr|Q08069|RS8_MAIZE5E-13440S ribosomal protein S8
trEMBLtr|B4FE90|B4FE90_MAIZE4E-13240S ribosomal protein S8 {ECO:0000256|RuleBase:RU000669}
TAIR10AT5G59240.11E-68Ribosomal protein S8e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8837473388376744-
GWHAAZE00000001mRNA8837473388376744-
GWHAAZE00000001exon8837668988376744-
GWHAAZE00000001exon8837571088376052-
GWHAAZE00000001exon8837529288375458-
GWHAAZE00000001exon8837473388374814-
GWHAAZE00000001CDS8837668988376744-
GWHAAZE00000001CDS8837571088376052-
GWHAAZE00000001CDS8837529288375458-
GWHAAZE00000001CDS8837473388374814-
Transcript Sequence

Network for GWHGAAZE002905

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01201.23Ribosomal_S8e21928.20E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02995RP-S8e, RPS8 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf152.429
SRR3591706second leaf36.908
SRR3591707mature leaf25.902
SRR3591708Shoot apex226.375
SRR3591709Stem69.718
SRR3591710White floral bud39.111
SRR3591711White flower61.138
SRR3591712Green floral bud117.283
SRR3591713Yellow flower21.716
SRP173429 SRR8316895Juvenile bud stage 97.672
SRR8316896Juvenile bud stage 126.135
SRR8316897Juvenile bud stage 57.100
SRR8316894Third green stage 49.098
SRR8316900Third green stage 158.856
SRR8316901Third green stage 160.840
SRR8316898Complete white stage 18.206
SRR8316899Complete white stage 143.785
SRR8316903Complete white stage 24.136
SRR8316902Silver flowering stage19.173
SRR8316904Silver flowering stage21.761
SRR8316905Silver flowering stage11.998
SRR8316906Gold flowering stage 41.675
SRR8316907Gold flowering stage 45.815
SRR8316908Gold flowering stage 49.239
SRP132670SRR6706286Control196.964
SRR6706287Light intensity 50%186.562
SRR6706288Light intensity 20%195.938
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1165.851
CNS0095593Slightly white alabastrum(diploid) 2193.972
CNS0095594Slightly white alabastrum(diploid) 3162.281
CNS0095595Whole white alabastrum(diploid) 2140.973
CNS0095596Whole white alabastrum(diploid) 3179.443
CNS0095597Whole white alabastrum(diploid) 4130.840
CNS0095598Silvery flower (diploied) 195.270
CNS0095599Silvery flower (diploied) 272.428
CNS0095600Silvery flower (diploied) 357.574
CNS0095601Golden flower (diploid) 195.842
CNS0095602Golden flower (diploid) 254.735
CNS0095603Golden flower (diploid) 355.146
CNS0095604Slightly white alabastrum(tetraploid) 1120.937
CNS0095605Slightly white alabastrum(tetraploid) 2120.407
CNS0095606Slightly white alabastrum(tetraploid) 3192.800
CNS0095607Whole white alabastrum(tetraploid) 152.648
CNS0095608Whole white alabastrum(tetraploid) 254.428
CNS0095609Whole white alabastrum(tetraploid) 3160.015
CNS0095610Silvery flower (tetraploid) 133.463
CNS0095611Silvery flower (tetraploid) 229.018
CNS0095612Silvery flower (tetraploid) 310.933
CNS0095613Golden flower (tetraploid) 19.382
CNS0095614Golden flower (tetraploid) 225.154
CNS0095615Golden flower (tetraploid) 32.994
CRA001975CRR073297Stem 1213.178
CRR073298Stem 2210.040
CRR073299Stem 3219.707
CRR073300Leaf 1230.074
CRR073301Leaf 2233.503
CRR073302Leaf 3298.694
CRR073303Juvenile bud 1240.172
CRR073304Juvenile bud 2124.662
CRR073305Juvenile bud 3186.381
CRR073306Third green 17.924
CRR073307Third green 213.978
CRR073308Third green 313.234
CRR073309Second white 125.138
CRR073310Second white 220.477
CRR073311Second white 313.852
CRR073312Silver flowering 112.401
CRR073313Silver flowering 220.039
CRR073314Silver flowering 322.524
CRR073315Gold flowering 181.521
CRR073316Gold flowering 296.694
CRR073317Gold flowering 395.538
CRR073318Tawny withering 1221.319
CRR073319Tawny withering 2167.589
CRR073320Tawny withering 3210.098