Detail information of GWHGAAZE002891


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010270100.10PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Nelumbo nucifera]
Swissprottr|Q9MAU5|Y1049_ARATH0Putative BPI/LBP family protein At1g04970 (Precursor)
trEMBLtr|A0A022R0B2|A0A022R0B2_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU33676.1}
TAIR10AT1G04970.13E-140lipid-binding serum glycoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8814751788149928-
GWHAAZE00000001mRNA8814751788149928-
GWHAAZE00000001exon8814949488149928-
GWHAAZE00000001exon8814900988149148-
GWHAAZE00000001exon8814857088148921-
GWHAAZE00000001exon8814822188148469-
GWHAAZE00000001exon8814794488148069-
GWHAAZE00000001exon8814751788147803-
GWHAAZE00000001CDS8814949488149928-
GWHAAZE00000001CDS8814900988149148-
GWHAAZE00000001CDS8814857088148921-
GWHAAZE00000001CDS8814822188148469-
GWHAAZE00000001CDS8814794488148069-
GWHAAZE00000001CDS8814760988147803-
GWHAAZE00000001three_prime_UTR8814751788147608-
Transcript Sequence

Network for GWHGAAZE002891

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0174GO:0005615 extracellular space GOslim:cellular_component
map04620 Toll-like receptor signaling pathway
map00531 Glycosaminoglycan degradation
map04064 NF-kappa B signaling pathway
GO:0008289 lipid binding GOslim:molecular_function
GO:0004252 serine-type endopeptidase activity GOslim:molecular_function
map04142 Lysosome
GO:0006508 proteolysis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01273.26LBP_BPI_CETP462191.50E-24
PF02886.18LBP_BPI_CETP_C2804853.10E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05399LBP NF-kappa B signaling pathway map04064
Toll-like receptor signaling pathwaymap04620

Gene Ontology

GO term OntologyName
GO:0005615cellular_componentextracellular space
GO:0008289molecular_functionlipid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.953
SRR3591706second leaf19.279
SRR3591707mature leaf37.661
SRR3591708Shoot apex11.568
SRR3591709Stem27.487
SRR3591710White floral bud21.621
SRR3591711White flower20.348
SRR3591712Green floral bud15.353
SRR3591713Yellow flower11.623
SRP173429 SRR8316895Juvenile bud stage 9.271
SRR8316896Juvenile bud stage 14.039
SRR8316897Juvenile bud stage 4.916
SRR8316894Third green stage 5.194
SRR8316900Third green stage 11.750
SRR8316901Third green stage 12.104
SRR8316898Complete white stage 2.839
SRR8316899Complete white stage 20.391
SRR8316903Complete white stage 6.609
SRR8316902Silver flowering stage1.140
SRR8316904Silver flowering stage3.138
SRR8316905Silver flowering stage0.917
SRR8316906Gold flowering stage 2.755
SRR8316907Gold flowering stage 3.542
SRR8316908Gold flowering stage 5.252
SRP132670SRR6706286Control3.824
SRR6706287Light intensity 50%3.581
SRR6706288Light intensity 20%3.786
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.476
CNS0095593Slightly white alabastrum(diploid) 210.759
CNS0095594Slightly white alabastrum(diploid) 312.426
CNS0095595Whole white alabastrum(diploid) 29.951
CNS0095596Whole white alabastrum(diploid) 34.498
CNS0095597Whole white alabastrum(diploid) 410.386
CNS0095598Silvery flower (diploied) 127.644
CNS0095599Silvery flower (diploied) 217.919
CNS0095600Silvery flower (diploied) 39.652
CNS0095601Golden flower (diploid) 123.184
CNS0095602Golden flower (diploid) 217.433
CNS0095603Golden flower (diploid) 317.438
CNS0095604Slightly white alabastrum(tetraploid) 17.627
CNS0095605Slightly white alabastrum(tetraploid) 27.050
CNS0095606Slightly white alabastrum(tetraploid) 315.515
CNS0095607Whole white alabastrum(tetraploid) 17.880
CNS0095608Whole white alabastrum(tetraploid) 24.240
CNS0095609Whole white alabastrum(tetraploid) 39.250
CNS0095610Silvery flower (tetraploid) 16.325
CNS0095611Silvery flower (tetraploid) 210.623
CNS0095612Silvery flower (tetraploid) 313.837
CNS0095613Golden flower (tetraploid) 12.818
CNS0095614Golden flower (tetraploid) 27.083
CNS0095615Golden flower (tetraploid) 31.697
CRA001975CRR073297Stem 110.623
CRR073298Stem 27.983
CRR073299Stem 37.572
CRR073300Leaf 15.104
CRR073301Leaf 26.104
CRR073302Leaf 34.302
CRR073303Juvenile bud 14.176
CRR073304Juvenile bud 23.583
CRR073305Juvenile bud 35.663
CRR073306Third green 10.358
CRR073307Third green 20.504
CRR073308Third green 30.695
CRR073309Second white 10.495
CRR073310Second white 20.706
CRR073311Second white 30.586
CRR073312Silver flowering 11.532
CRR073313Silver flowering 22.235
CRR073314Silver flowering 31.978
CRR073315Gold flowering 129.739
CRR073316Gold flowering 239.773
CRR073317Gold flowering 331.608
CRR073318Tawny withering 117.484
CRR073319Tawny withering 219.311
CRR073320Tawny withering 313.424