Detail information of GWHGAAZE002886


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP20674.10hypothetical protein JCGZ_21145 [Jatropha curcas]
COGYP_004345481.15E-15phosphatidate cytidylyltransferase
Swissprottr|O04940|CDS1_SOLTU0Phosphatidate cytidylyltransferase
trEMBLtr|A0A067JMG2|A0A067JMG2_JATCU0Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}
TAIR10AT4G22340.30cytidinediphosphate diacylglycerol synthase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8807634188079864-
GWHAAZE00000001mRNA8807634188079864-
GWHAAZE00000001exon8807634188076430-
GWHAAZE00000001exon8807651988076602-
GWHAAZE00000001exon8807670988076765-
GWHAAZE00000001exon8807684388076971-
GWHAAZE00000001exon8807784988077935-
GWHAAZE00000001exon8807802388078070-
GWHAAZE00000001exon8807825088078406-
GWHAAZE00000001exon8807869488078835-
GWHAAZE00000001exon8807905788079208-
GWHAAZE00000001exon8807932688079579-
GWHAAZE00000001exon8807979688079864-
GWHAAZE00000001CDS8807979688079864-
GWHAAZE00000001CDS8807932688079579-
GWHAAZE00000001CDS8807905788079208-
GWHAAZE00000001CDS8807869488078835-
GWHAAZE00000001CDS8807825088078406-
GWHAAZE00000001CDS8807802388078070-
GWHAAZE00000001CDS8807784988077935-
GWHAAZE00000001CDS8807684388076971-
GWHAAZE00000001CDS8807670988076765-
GWHAAZE00000001CDS8807651988076602-
GWHAAZE00000001CDS8807634188076430-
Transcript Sequence

Network for GWHGAAZE002886

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01148.21CTP_transf_1493792.50E-84
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00981E2.7.7.41, CDS1, CDS2, cdsA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Phosphatidylinositol signaling systemmap04070

Gene Ontology

GO term OntologyName
GO:0016020cellular_componentmembrane
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002886.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3010202.557.512.51517.522.52527.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.398
SRR3591706second leaf0.214
SRR3591707mature leaf0.445
SRR3591708Shoot apex0.098
SRR3591709Stem0.389
SRR3591710White floral bud0.850
SRR3591711White flower0.301
SRR3591712Green floral bud18.227
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.399
SRR8316896Juvenile bud stage 9.793
SRR8316897Juvenile bud stage 4.653
SRR8316894Third green stage 4.025
SRR8316900Third green stage 11.448
SRR8316901Third green stage 13.317
SRR8316898Complete white stage 0.675
SRR8316899Complete white stage 1.846
SRR8316903Complete white stage 1.271
SRR8316902Silver flowering stage0.175
SRR8316904Silver flowering stage0.766
SRR8316905Silver flowering stage0.134
SRR8316906Gold flowering stage 0.130
SRR8316907Gold flowering stage 0.251
SRR8316908Gold flowering stage 0.057
SRP132670SRR6706286Control3.096
SRR6706287Light intensity 50%2.875
SRR6706288Light intensity 20%2.515
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.885
CNS0095593Slightly white alabastrum(diploid) 210.929
CNS0095594Slightly white alabastrum(diploid) 317.934
CNS0095595Whole white alabastrum(diploid) 218.222
CNS0095596Whole white alabastrum(diploid) 321.875
CNS0095597Whole white alabastrum(diploid) 415.466
CNS0095598Silvery flower (diploied) 18.227
CNS0095599Silvery flower (diploied) 27.468
CNS0095600Silvery flower (diploied) 32.481
CNS0095601Golden flower (diploid) 19.305
CNS0095602Golden flower (diploid) 25.982
CNS0095603Golden flower (diploid) 36.005
CNS0095604Slightly white alabastrum(tetraploid) 120.039
CNS0095605Slightly white alabastrum(tetraploid) 219.906
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 123.941
CNS0095608Whole white alabastrum(tetraploid) 221.150
CNS0095609Whole white alabastrum(tetraploid) 311.211
CNS0095610Silvery flower (tetraploid) 10.008
CNS0095611Silvery flower (tetraploid) 20.135
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.244
CNS0095615Golden flower (tetraploid) 30.027
CRA001975CRR073297Stem 10.673
CRR073298Stem 21.493
CRR073299Stem 30.954
CRR073300Leaf 13.318
CRR073301Leaf 23.793
CRR073302Leaf 33.377
CRR073303Juvenile bud 11.526
CRR073304Juvenile bud 20.445
CRR073305Juvenile bud 30.274
CRR073306Third green 10.000
CRR073307Third green 20.040
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.171
CRR073313Silver flowering 20.213
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.036
CRR073316Gold flowering 20.041
CRR073317Gold flowering 30.012
CRR073318Tawny withering 10.238
CRR073319Tawny withering 20.075
CRR073320Tawny withering 30.291