Gene detail

Detail information of GWHGAAZE002881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095452.1	0	PREDICTED: EH domain-containing protein 1-like [Sesamum indicum]
COG	YP_007468115.1	3E-24	dynamin family protein
trEMBL	tr\|D7T831\|D7T831_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26690.3}
TAIR10	AT3G20290.2	0	EPS15 homology domain 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	88001877	88010525	+
GWHAAZE00000001	mRNA	88001877	88010525	+
GWHAAZE00000001	exon	88001877	88001961	+
GWHAAZE00000001	exon	88002056	88002135	+
GWHAAZE00000001	exon	88004545	88004613	+
GWHAAZE00000001	exon	88004695	88004752	+
GWHAAZE00000001	exon	88004892	88004947	+
GWHAAZE00000001	exon	88005032	88005065	+
GWHAAZE00000001	exon	88005147	88005208	+
GWHAAZE00000001	exon	88006166	88006279	+
GWHAAZE00000001	exon	88006442	88006544	+
GWHAAZE00000001	exon	88006627	88006676	+
GWHAAZE00000001	exon	88008119	88008247	+
GWHAAZE00000001	exon	88008325	88008576	+
GWHAAZE00000001	exon	88008766	88008845	+
GWHAAZE00000001	exon	88009223	88009349	+
GWHAAZE00000001	exon	88009498	88009671	+
GWHAAZE00000001	exon	88010340	88010525	+
GWHAAZE00000001	CDS	88001877	88001961	+
GWHAAZE00000001	CDS	88002056	88002135	+
GWHAAZE00000001	CDS	88004545	88004613	+
GWHAAZE00000001	CDS	88004695	88004752	+
GWHAAZE00000001	CDS	88004892	88004947	+
GWHAAZE00000001	CDS	88005032	88005065	+
GWHAAZE00000001	CDS	88005147	88005208	+
GWHAAZE00000001	CDS	88006166	88006279	+
GWHAAZE00000001	CDS	88006442	88006544	+
GWHAAZE00000001	CDS	88006627	88006676	+
GWHAAZE00000001	CDS	88008119	88008247	+
GWHAAZE00000001	CDS	88008325	88008576	+
GWHAAZE00000001	CDS	88008766	88008845	+
GWHAAZE00000001	CDS	88009223	88009349	+
GWHAAZE00000001	CDS	88009498	88009671	+
GWHAAZE00000001	CDS	88010340	88010525	+

Transcript Sequence
>GWHTAAZE002885 ATGGAGATTGATTCGGCTCCTATTAGTCGGTGCTCCAAAGATCACCAGAAGATCTATCAGGAATGGTTTAGTTTCGCTGATTCAGATGGCGATGGACGAATTACTGGAGGTGATGCCATCAAGTTATTTTCCATGTCCAATTTGCCTCGTCAAGATCTCAAACAGGTATGGGCAGTTGCAGATTCCAAACGGCAAGGCTTTCTTGGTTTCAAAGAGTTCATTACTGCAATGCAGTTAGTTTCCTTGGCACAAGCTGGAAATGCAATTTCTAGTGATCTCTTAAATGCTGAAGTTGATTTTGAAAGTCTGAAACCTCCACTCATGGAGGGTTTGGATGTATTACTAGCTAAGAAAAAGCGCAAAAGTGAGACTGAAGCGAATGGTAGTTCTCAAGTGCAAAGTTCACCACCAACTTGGTTTTCTTCTTCAAAATCTGCAAAGAAGGTGCCTTTATCCTCTGTTACATCAATTTTTGATGGCCTGAAGAAATTGTATGTTCAAAAGCTGAAGCCTTTAGAAGTAGCATATCGATTTAACGATTTCGTTTCTCCCTTATTGACAAATAGTGATTTTGAGGCCAAGCCAATGGTGATGCTTTTGGGCCAATACTCGACCGGGAAGACAACATTCATTAAGCATTTGCTCAGAAGTAGTTACCCAGGAGCTCACATTGGTCCAGAGCCTACAACGGACAGATTTGTGGTTGTTATGAATGGACCTGATGAAAGAAGTATTCCGGGGAATACTATTGCTGTTCAAGCCGATATGCCATACAGCGGCCTAACTAATTTTGGAACTGCTTTTCTATCAAAATTCGAGTGTTCTCAAATGCCACATCCTCTACTGGAGCACATTACGTTTGTGGACACTCCTGGAGTTTTATCCGGAGAAAAGCAACGGACTCAGCGAAGTTATGATTTTACCGGTGTGACATCATGGTTTGCTGCAAAGTGTGACCTCATTATACTTCTCTTTGATCCTCACAAACTTGATATCAGTGATGAATTCAAACGTGTGATTTCATCTCTACGAGGACATGATGACAAAATACGAGTGGTGTTGAACAAGGCTGACCAAGTTGATACCCAACAACTGATGAGGGTATATGGAGCATTGATGTGGTCCCTTGGGAAGGTTCTAAATACTCCTGAAGTTATGCGTGTTTATATTGGTTCCTTCAATGACAAACCTATAAATGAGGCTGCTTCGGGCCCCATTGGAAGAGAACTTTTTGAGAAAGAACAGGATGACCTTCTTGCTGATTTAAAAGACATACCAAAGAAGGCCTGTGATCGTCGAATAAATGAATTTGTAAAACGAGCTAGGGCTGCCAAGATTCATGCTTTCATCATCAGCCATCTTAAAAAGGAGATGCCGGCTATGATTGGCAAAGCAAAGACTCAGCAAAAACTCATTGACAATTTAGAAGATGAATTTGCAAAGGTCCTCTCTCTCTCTCTCTCTCTGTGGGGCGTACAAAGGGAGCACCATTTACCAGCGGGAGATTTCCCAAACGTGGAGCACTTTAGGGAGAGATTGAGCGGATACAACATAGATAAGTTCGAAAAGCTGAAGTCAAAAATGATACAATCTGTAGATGACATGCTTGGCTATGACGTTCCTGAACTCCTTAAGAGTTTCCGAAATCCCTACGACTAA

Network for GWHGAAZE002881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12763.8	EF-hand_4	16	80	1.60E-06
PF16880.6	EHD_N	160	192	1.40E-15
PF00350.24	Dynamin_N	197	356	6.90E-11
PF18150.2	DUF5600	432	543	5.80E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12483	EHD1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0005525	molecular_function	GTP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.544
	SRR3591706	second leaf	34.176
	SRR3591707	mature leaf	38.189
	SRR3591708	Shoot apex	48.147
	SRR3591709	Stem	59.443
	SRR3591710	White floral bud	53.407
	SRR3591711	White flower	60.438
	SRR3591712	Green floral bud	59.746
	SRR3591713	Yellow flower	61.173
SRP173429	SRR8316895	Juvenile bud stage	30.229
	SRR8316896	Juvenile bud stage	46.217
	SRR8316897	Juvenile bud stage	25.414
	SRR8316894	Third green stage	18.420
	SRR8316900	Third green stage	49.880
	SRR8316901	Third green stage	50.154
	SRR8316898	Complete white stage	28.331
	SRR8316899	Complete white stage	81.159
	SRR8316903	Complete white stage	33.366
	SRR8316902	Silver flowering stage	24.079
	SRR8316904	Silver flowering stage	35.977
	SRR8316905	Silver flowering stage	14.308
	SRR8316906	Gold flowering stage	49.363
	SRR8316907	Gold flowering stage	46.505
	SRR8316908	Gold flowering stage	51.555
SRP132670	SRR6706286	Control	28.451
	SRR6706287	Light intensity 50%	32.397
	SRR6706288	Light intensity 20%	35.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.476
	CNS0095593	Slightly white alabastrum(diploid) 2	35.978
	CNS0095594	Slightly white alabastrum(diploid) 3	39.235
	CNS0095595	Whole white alabastrum(diploid) 2	39.157
	CNS0095596	Whole white alabastrum(diploid) 3	35.677
	CNS0095597	Whole white alabastrum(diploid) 4	37.326
	CNS0095598	Silvery flower (diploied) 1	39.194
	CNS0095599	Silvery flower (diploied) 2	30.034
	CNS0095600	Silvery flower (diploied) 3	54.497
	CNS0095601	Golden flower (diploid) 1	35.520
	CNS0095602	Golden flower (diploid) 2	54.335
	CNS0095603	Golden flower (diploid) 3	54.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.364
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.708
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.271
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.518
	CNS0095610	Silvery flower (tetraploid) 1	56.722
	CNS0095611	Silvery flower (tetraploid) 2	56.422
	CNS0095612	Silvery flower (tetraploid) 3	50.821
	CNS0095613	Golden flower (tetraploid) 1	29.931
	CNS0095614	Golden flower (tetraploid) 2	44.016
	CNS0095615	Golden flower (tetraploid) 3	43.136
CRA001975	CRR073297	Stem 1	33.780
	CRR073298	Stem 2	30.640
	CRR073299	Stem 3	25.165
	CRR073300	Leaf 1	34.137
	CRR073301	Leaf 2	29.051
	CRR073302	Leaf 3	29.807
	CRR073303	Juvenile bud 1	30.896
	CRR073304	Juvenile bud 2	20.254
	CRR073305	Juvenile bud 3	24.381
	CRR073306	Third green 1	14.735
	CRR073307	Third green 2	14.036
	CRR073308	Third green 3	16.111
	CRR073309	Second white 1	12.052
	CRR073310	Second white 2	19.813
	CRR073311	Second white 3	12.271
	CRR073312	Silver flowering 1	7.047
	CRR073313	Silver flowering 2	7.329
	CRR073314	Silver flowering 3	9.938
	CRR073315	Gold flowering 1	22.706
	CRR073316	Gold flowering 2	31.023
	CRR073317	Gold flowering 3	13.202
	CRR073318	Tawny withering 1	22.684
	CRR073319	Tawny withering 2	21.447
	CRR073320	Tawny withering 3	27.950