Detail information of GWHGAAZE002879


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009770784.13.28815E-65PREDICTED: ethylene-responsive transcription factor 3-like [Nicotiana sylvestris]
Swissprottr|Q9SXS8|ERF3_TOBAC2E-51Ethylene-responsive transcription factor 3
trEMBLtr|A0A068BGH5|A0A068BGH5_JATCU2E-65C-repeat binding transcription factor 2 {ECO:0000313|EMBL:AIC83902.1}
TAIR10AT1G50640.12E-23ethylene responsive element binding factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8794831487948949+
GWHAAZE00000001mRNA8794831487948949+
GWHAAZE00000001exon8794831487948742+
GWHAAZE00000001exon8794877687948949+
GWHAAZE00000001CDS8794831487948742+
GWHAAZE00000001CDS8794877687948949+
Transcript Sequence

Network for GWHGAAZE002879

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP225742.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002879.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3050100150200250300350400Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf90.449
SRR3591706second leaf51.448
SRR3591707mature leaf57.766
SRR3591708Shoot apex86.508
SRR3591709Stem130.317
SRR3591710White floral bud84.924
SRR3591711White flower81.922
SRR3591712Green floral bud65.340
SRR3591713Yellow flower66.413
SRP173429 SRR8316895Juvenile bud stage 68.796
SRR8316896Juvenile bud stage 97.561
SRR8316897Juvenile bud stage 36.493
SRR8316894Third green stage 27.143
SRR8316900Third green stage 72.601
SRR8316901Third green stage 90.748
SRR8316898Complete white stage 47.503
SRR8316899Complete white stage 161.252
SRR8316903Complete white stage 56.234
SRR8316902Silver flowering stage37.209
SRR8316904Silver flowering stage30.650
SRR8316905Silver flowering stage18.531
SRR8316906Gold flowering stage 65.791
SRR8316907Gold flowering stage 64.994
SRR8316908Gold flowering stage 59.015
SRP132670SRR6706286Control81.479
SRR6706287Light intensity 50%69.307
SRR6706288Light intensity 20%63.597
CNP0000432CNS0095592Slightly white alabastrum(diploid) 193.420
CNS0095593Slightly white alabastrum(diploid) 2113.525
CNS0095594Slightly white alabastrum(diploid) 3118.764
CNS0095595Whole white alabastrum(diploid) 283.930
CNS0095596Whole white alabastrum(diploid) 382.574
CNS0095597Whole white alabastrum(diploid) 486.832
CNS0095598Silvery flower (diploied) 1117.725
CNS0095599Silvery flower (diploied) 2117.241
CNS0095600Silvery flower (diploied) 3138.567
CNS0095601Golden flower (diploid) 1172.323
CNS0095602Golden flower (diploid) 2166.322
CNS0095603Golden flower (diploid) 3150.543
CNS0095604Slightly white alabastrum(tetraploid) 166.213
CNS0095605Slightly white alabastrum(tetraploid) 266.313
CNS0095606Slightly white alabastrum(tetraploid) 384.188
CNS0095607Whole white alabastrum(tetraploid) 181.652
CNS0095608Whole white alabastrum(tetraploid) 274.117
CNS0095609Whole white alabastrum(tetraploid) 356.544
CNS0095610Silvery flower (tetraploid) 178.270
CNS0095611Silvery flower (tetraploid) 288.138
CNS0095612Silvery flower (tetraploid) 3155.665
CNS0095613Golden flower (tetraploid) 174.074
CNS0095614Golden flower (tetraploid) 274.755
CNS0095615Golden flower (tetraploid) 3110.781
CRA001975CRR073297Stem 1136.192
CRR073298Stem 2141.598
CRR073299Stem 3188.757
CRR073300Leaf 1171.147
CRR073301Leaf 2201.503
CRR073302Leaf 3173.783
CRR073303Juvenile bud 1182.966
CRR073304Juvenile bud 2186.614
CRR073305Juvenile bud 3194.412
CRR073306Third green 1373.333
CRR073307Third green 2338.093
CRR073308Third green 3304.544
CRR073309Second white 1194.949
CRR073310Second white 2211.095
CRR073311Second white 3181.239
CRR073312Silver flowering 1211.611
CRR073313Silver flowering 2182.890
CRR073314Silver flowering 3191.640
CRR073315Gold flowering 186.838
CRR073316Gold flowering 2108.085
CRR073317Gold flowering 393.536
CRR073318Tawny withering 1232.095
CRR073319Tawny withering 2309.097
CRR073320Tawny withering 3290.544