Gene detail

Detail information of GWHGAAZE002875

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGO32051.1	0	GDP-L-galactose phosphorylase [Actinidia rufa]
COG	YP_314743.1	2E-13	hypothetical protein Tbd_0985
Swissprot	tr\|Q8RWE8\|GGAP1_ARATH	0	GDP-L-galactose phosphorylase 1
trEMBL	tr\|V9NES9\|V9NES9_9ERIC	0	GDP-L-galactose phosphorylase {ECO:0000313\|EMBL:AGO32051.1}
TAIR10	AT4G26850.1	0	mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87889871	87891857	+
GWHAAZE00000001	mRNA	87889871	87891857	+
GWHAAZE00000001	exon	87889871	87889991	+
GWHAAZE00000001	exon	87890101	87890222	+
GWHAAZE00000001	exon	87890309	87890368	+
GWHAAZE00000001	exon	87890501	87890743	+
GWHAAZE00000001	exon	87890830	87891015	+
GWHAAZE00000001	exon	87891146	87891397	+
GWHAAZE00000001	exon	87891510	87891857	+
GWHAAZE00000001	CDS	87889871	87889991	+
GWHAAZE00000001	CDS	87890101	87890222	+
GWHAAZE00000001	CDS	87890309	87890368	+
GWHAAZE00000001	CDS	87890501	87890743	+
GWHAAZE00000001	CDS	87890830	87891015	+
GWHAAZE00000001	CDS	87891146	87891397	+
GWHAAZE00000001	CDS	87891510	87891857	+

Transcript Sequence
>GWHTAAZE002879 ATGTTGAGGATCAAAAGGGTTCCTACCGTTGTTTCCAACTACCAAAAGGAAGAGGGGGATGAAGGTGCTCCCCGCTTAGATGGCTGCGGCCGTAATTGCCTCAACAATTGTTGCGTTACAGGGGCAAAGCTACCTTTGTATGCTTTCAAGAAGGTGAATGATATTTCTAGCGGAAAGGGTTTGTTTACCTATGACAACAAAGAGCCCCCTGTTGCCTTCTTGGACTCGCTCCTCCTTGGGGAGTGGGAGGATCGTATGCAGAGGGGGCTTTTTCGCTATGATGTTACTGCCTGCGAAACCAAGGTGATTCCTGGGGTATATGGTTTTATTGCACAGCTGAATGAGGGTCGTCACCTCAAGAAAAGGCCAACTGAGTTTCAAGTGGACAAGGTCCTGCAGCCCTTTGATGGGAACAAATTCAACTTCACCAAAGTCGGGCAGGAAGAGGTGCTCTTCCAGTTTGAAGCAAGCGAGGATAATGAAGTCCAGTTCTTCCCAAATGCGCCCATTGATATCGAGAACTCCCCAAGTGTTGTTGCCATCAACGTTAGTCCTATTGAATATGGGCATGTGCTTTTGATCCCTCGCGTTCTTGAGCGCTTGCCCCAGAGAATTGACCGTGAAAGCTTCTTGCTAGCACTTCACATGGCAGCAGAAGCAGGTAGTCCATACTTCCGACTTGGTTATAATAGCCTGGGCGCATTTGCTACCATCAACCATCTTCACTTCCAGGCTTATTACTTGGCCGTACCCTTCCCCATTGAGAAGGCTCCAACGGGGAAGACAACCACTTTCAATGATGGGGTGAAGATATCTGAAATTTTGGACTATCCTGTTAGAGGTCTTGTCTTTGAGAGCGGTTTGAGTGCTATTGAAGATTTGTCGAATGCTGTCTCTGACTCCTGCATTTGCCTTCAAGACAACAACATACCTTACAATGTCCTTATTTCCGATTCTGGAAGGCGCATCTTTCTCCTCCCGCAGTGTTACGCGGAGAAACAGGCTCTTGGGGAAGTGAGTGCTGAGCTCTTGGATACCCAAGTGAACCCTGCTGTTTGGGAGATTAGTGGGCATATGGTGTTGAAGAGGAAAGAGGACTATGAGGAGGCATCTGAGGAGAATGCTTGGAGGCTTCTTGCTGAGGTCTCCCTCTCTGAAGAGAGGTTCCAAGAAGTGATAGCTATTATCTTTGAGGCCATCTCTTGTTCACTTGATGAAGATGGAAGCACCAGTAAGAGCTTGGACGAGGCTGTTGAAGAAGTAGACCCCCTTAACAAAGGCCCCCGTTCTGGTATGGTGACCGGAAAGCAAGAATGCATAGTTCTACACTAA

Network for GWHGAAZE002875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14190	VTC2_5	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	210.439
	SRR3591706	second leaf	446.502
	SRR3591707	mature leaf	866.218
	SRR3591708	Shoot apex	309.840
	SRR3591709	Stem	592.856
	SRR3591710	White floral bud	393.033
	SRR3591711	White flower	525.805
	SRR3591712	Green floral bud	349.540
	SRR3591713	Yellow flower	370.161
SRP173429	SRR8316895	Juvenile bud stage	187.788
	SRR8316896	Juvenile bud stage	225.707
	SRR8316897	Juvenile bud stage	135.384
	SRR8316894	Third green stage	91.406
	SRR8316900	Third green stage	195.022
	SRR8316901	Third green stage	185.864
	SRR8316898	Complete white stage	87.599
	SRR8316899	Complete white stage	315.383
	SRR8316903	Complete white stage	188.701
	SRR8316902	Silver flowering stage	68.014
	SRR8316904	Silver flowering stage	85.213
	SRR8316905	Silver flowering stage	46.954
	SRR8316906	Gold flowering stage	98.070
	SRR8316907	Gold flowering stage	118.896
	SRR8316908	Gold flowering stage	150.862
SRP132670	SRR6706286	Control	355.111
	SRR6706287	Light intensity 50%	352.213
	SRR6706288	Light intensity 20%	370.375
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	120.675
	CNS0095593	Slightly white alabastrum(diploid) 2	130.057
	CNS0095594	Slightly white alabastrum(diploid) 3	115.888
	CNS0095595	Whole white alabastrum(diploid) 2	113.744
	CNS0095596	Whole white alabastrum(diploid) 3	85.651
	CNS0095597	Whole white alabastrum(diploid) 4	123.225
	CNS0095598	Silvery flower (diploied) 1	640.169
	CNS0095599	Silvery flower (diploied) 2	565.307
	CNS0095600	Silvery flower (diploied) 3	491.703
	CNS0095601	Golden flower (diploid) 1	634.034
	CNS0095602	Golden flower (diploid) 2	627.062
	CNS0095603	Golden flower (diploid) 3	611.376
	CNS0095604	Slightly white alabastrum(tetraploid) 1	159.412
	CNS0095605	Slightly white alabastrum(tetraploid) 2	125.788
	CNS0095606	Slightly white alabastrum(tetraploid) 3	333.924
	CNS0095607	Whole white alabastrum(tetraploid) 1	110.753
	CNS0095608	Whole white alabastrum(tetraploid) 2	102.818
	CNS0095609	Whole white alabastrum(tetraploid) 3	256.405
	CNS0095610	Silvery flower (tetraploid) 1	264.632
	CNS0095611	Silvery flower (tetraploid) 2	438.846
	CNS0095612	Silvery flower (tetraploid) 3	541.197
	CNS0095613	Golden flower (tetraploid) 1	114.591
	CNS0095614	Golden flower (tetraploid) 2	186.618
	CNS0095615	Golden flower (tetraploid) 3	250.991
CRA001975	CRR073297	Stem 1	172.361
	CRR073298	Stem 2	161.769
	CRR073299	Stem 3	182.369
	CRR073300	Leaf 1	160.710
	CRR073301	Leaf 2	175.105
	CRR073302	Leaf 3	146.148
	CRR073303	Juvenile bud 1	167.160
	CRR073304	Juvenile bud 2	184.912
	CRR073305	Juvenile bud 3	301.116
	CRR073306	Third green 1	145.682
	CRR073307	Third green 2	144.043
	CRR073308	Third green 3	157.877
	CRR073309	Second white 1	86.479
	CRR073310	Second white 2	40.351
	CRR073311	Second white 3	35.894
	CRR073312	Silver flowering 1	38.685
	CRR073313	Silver flowering 2	51.481
	CRR073314	Silver flowering 3	54.348
	CRR073315	Gold flowering 1	542.267
	CRR073316	Gold flowering 2	631.488
	CRR073317	Gold flowering 3	759.549
	CRR073318	Tawny withering 1	371.130
	CRR073319	Tawny withering 2	334.285
	CRR073320	Tawny withering 3	303.408