Detail information of GWHGAAZE002871


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011095434.16.0681E-129PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
trEMBLtr|A0A061GZ44|A0A061GZ44_THECC2E-128Cell differentiation, Rcd1-like protein isoform 2 {ECO:0000313|EMBL:EOY32529.1}
TAIR10AT3G20800.11E-95Cell differentiation, Rcd1-like protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8783636987840883+
GWHAAZE00000001mRNA8783636987840883+
GWHAAZE00000001exon8783636987836521+
GWHAAZE00000001exon8783754687837617+
GWHAAZE00000001exon8783800887838044+
GWHAAZE00000001exon8783832187838463+
GWHAAZE00000001exon8783855887838600+
GWHAAZE00000001exon8783902187839121+
GWHAAZE00000001exon8783971587839896+
GWHAAZE00000001exon8784005987840128+
GWHAAZE00000001exon8784079487840883+
GWHAAZE00000001CDS8783636987836521+
GWHAAZE00000001CDS8783754687837617+
GWHAAZE00000001CDS8783800887838044+
GWHAAZE00000001CDS8783832187838463+
GWHAAZE00000001CDS8783855887838600+
GWHAAZE00000001CDS8783902187839121+
GWHAAZE00000001CDS8783971587839896+
GWHAAZE00000001CDS8784005987840128+
GWHAAZE00000001CDS8784079487840883+
Transcript Sequence

Network for GWHGAAZE002871

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04078.14Rcd133751.30E-08
PF04078.14Rcd11011841.70E-37
PF04078.14Rcd11842831.20E-38
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyRcd1-like

KEGG pathway

KO Enzyme pathway mapID
K12606RCD1, CNOT9, CAF40 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.319
SRR3591706second leaf8.141
SRR3591707mature leaf5.240
SRR3591708Shoot apex12.965
SRR3591709Stem9.916
SRR3591710White floral bud7.657
SRR3591711White flower7.125
SRR3591712Green floral bud13.535
SRR3591713Yellow flower7.693
SRP173429 SRR8316895Juvenile bud stage 10.990
SRR8316896Juvenile bud stage 18.436
SRR8316897Juvenile bud stage 7.493
SRR8316894Third green stage 7.165
SRR8316900Third green stage 18.822
SRR8316901Third green stage 18.931
SRR8316898Complete white stage 3.232
SRR8316899Complete white stage 12.949
SRR8316903Complete white stage 5.577
SRR8316902Silver flowering stage4.537
SRR8316904Silver flowering stage5.633
SRR8316905Silver flowering stage2.219
SRR8316906Gold flowering stage 5.293
SRR8316907Gold flowering stage 8.618
SRR8316908Gold flowering stage 5.038
SRP132670SRR6706286Control15.290
SRR6706287Light intensity 50%14.614
SRR6706288Light intensity 20%14.843
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.660
CNS0095593Slightly white alabastrum(diploid) 215.740
CNS0095594Slightly white alabastrum(diploid) 320.971
CNS0095595Whole white alabastrum(diploid) 214.695
CNS0095596Whole white alabastrum(diploid) 316.502
CNS0095597Whole white alabastrum(diploid) 411.171
CNS0095598Silvery flower (diploied) 17.616
CNS0095599Silvery flower (diploied) 210.456
CNS0095600Silvery flower (diploied) 36.917
CNS0095601Golden flower (diploid) 16.091
CNS0095602Golden flower (diploid) 26.882
CNS0095603Golden flower (diploid) 36.661
CNS0095604Slightly white alabastrum(tetraploid) 125.100
CNS0095605Slightly white alabastrum(tetraploid) 221.273
CNS0095606Slightly white alabastrum(tetraploid) 318.149
CNS0095607Whole white alabastrum(tetraploid) 118.334
CNS0095608Whole white alabastrum(tetraploid) 214.632
CNS0095609Whole white alabastrum(tetraploid) 320.605
CNS0095610Silvery flower (tetraploid) 19.593
CNS0095611Silvery flower (tetraploid) 27.273
CNS0095612Silvery flower (tetraploid) 37.237
CNS0095613Golden flower (tetraploid) 19.375
CNS0095614Golden flower (tetraploid) 210.370
CNS0095615Golden flower (tetraploid) 37.726
CRA001975CRR073297Stem 123.227
CRR073298Stem 218.292
CRR073299Stem 314.438
CRR073300Leaf 118.485
CRR073301Leaf 218.211
CRR073302Leaf 312.305
CRR073303Juvenile bud 110.594
CRR073304Juvenile bud 211.978
CRR073305Juvenile bud 39.851
CRR073306Third green 11.974
CRR073307Third green 21.418
CRR073308Third green 34.310
CRR073309Second white 12.640
CRR073310Second white 23.566
CRR073311Second white 31.607
CRR073312Silver flowering 12.152
CRR073313Silver flowering 23.797
CRR073314Silver flowering 32.110
CRR073315Gold flowering 15.102
CRR073316Gold flowering 29.816
CRR073317Gold flowering 35.016
CRR073318Tawny withering 121.008
CRR073319Tawny withering 213.939
CRR073320Tawny withering 319.612