Detail information of GWHGAAZE002860


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002279105.10PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic [Vitis vinifera]
COGYP_007244255.10imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Swissprottr|Q9SZ30|HIS4_ARATH0Cyclase (Precursor)
trEMBLtr|W8SRK9|W8SRK9_TOBAC0Imidazole glycerol phosphate synthase {ECO:0000313|EMBL:AHM22939.1}
TAIR10AT4G26900.10HIS HF

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8758677087595258-
GWHAAZE00000001mRNA8758677087595258-
GWHAAZE00000001exon8759507287595258-
GWHAAZE00000001exon8759489787594979-
GWHAAZE00000001exon8759378287593876-
GWHAAZE00000001exon8759317287593275-
GWHAAZE00000001exon8759223887592407-
GWHAAZE00000001exon8759201687592160-
GWHAAZE00000001exon8759115587591210-
GWHAAZE00000001exon8759103487591072-
GWHAAZE00000001exon8759078587590883-
GWHAAZE00000001exon8759009787590159-
GWHAAZE00000001exon8758995287590014-
GWHAAZE00000001exon8758975387589835-
GWHAAZE00000001exon8758840687588514-
GWHAAZE00000001exon8758811787588170-
GWHAAZE00000001exon8758774887587835-
GWHAAZE00000001exon8758761287587649-
GWHAAZE00000001exon8758734687587451-
GWHAAZE00000001exon8758703187587197-
GWHAAZE00000001exon8758677087586829-
GWHAAZE00000001CDS8759507287595258-
GWHAAZE00000001CDS8759489787594979-
GWHAAZE00000001CDS8759378287593876-
GWHAAZE00000001CDS8759317287593275-
GWHAAZE00000001CDS8759223887592407-
GWHAAZE00000001CDS8759201687592160-
GWHAAZE00000001CDS8759115587591210-
GWHAAZE00000001CDS8759103487591072-
GWHAAZE00000001CDS8759078587590883-
GWHAAZE00000001CDS8759009787590159-
GWHAAZE00000001CDS8758995287590014-
GWHAAZE00000001CDS8758975387589835-
GWHAAZE00000001CDS8758840687588514-
GWHAAZE00000001CDS8758811787588170-
GWHAAZE00000001CDS8758774887587835-
GWHAAZE00000001CDS8758761287587649-
GWHAAZE00000001CDS8758734687587451-
GWHAAZE00000001CDS8758703187587197-
GWHAAZE00000001CDS8758677087586829-
Transcript Sequence

Network for GWHGAAZE002860

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00117.29GATase662528.50E-21
PF00977.22His_biosynth2935842.80E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01663HIS7 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Histidine metabolismmap00340

Gene Ontology

GO term OntologyName
GO:0000105biological_processhistidine biosynthetic process
GO:0016763molecular_functiontransferase activity, transferring pentosyl groups
GO:0003824molecular_functioncatalytic activity
GO:0000107molecular_functionimidazoleglycerol-phosphate synthase activity
GO:0016833molecular_functionoxo-acid-lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.287
SRR3591706second leaf18.811
SRR3591707mature leaf8.700
SRR3591708Shoot apex43.258
SRR3591709Stem20.592
SRR3591710White floral bud10.511
SRR3591711White flower12.012
SRR3591712Green floral bud15.785
SRR3591713Yellow flower6.529
SRP173429 SRR8316895Juvenile bud stage 14.289
SRR8316896Juvenile bud stage 22.054
SRR8316897Juvenile bud stage 11.017
SRR8316894Third green stage 8.033
SRR8316900Third green stage 18.058
SRR8316901Third green stage 16.636
SRR8316898Complete white stage 2.811
SRR8316899Complete white stage 16.363
SRR8316903Complete white stage 5.194
SRR8316902Silver flowering stage2.401
SRR8316904Silver flowering stage4.403
SRR8316905Silver flowering stage1.448
SRR8316906Gold flowering stage 5.634
SRR8316907Gold flowering stage 6.095
SRR8316908Gold flowering stage 6.361
SRP132670SRR6706286Control14.308
SRR6706287Light intensity 50%16.059
SRR6706288Light intensity 20%17.672
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.652
CNS0095593Slightly white alabastrum(diploid) 214.395
CNS0095594Slightly white alabastrum(diploid) 313.887
CNS0095595Whole white alabastrum(diploid) 211.996
CNS0095596Whole white alabastrum(diploid) 39.461
CNS0095597Whole white alabastrum(diploid) 49.244
CNS0095598Silvery flower (diploied) 117.370
CNS0095599Silvery flower (diploied) 214.119
CNS0095600Silvery flower (diploied) 37.287
CNS0095601Golden flower (diploid) 111.363
CNS0095602Golden flower (diploid) 27.960
CNS0095603Golden flower (diploid) 37.670
CNS0095604Slightly white alabastrum(tetraploid) 117.471
CNS0095605Slightly white alabastrum(tetraploid) 213.574
CNS0095606Slightly white alabastrum(tetraploid) 328.936
CNS0095607Whole white alabastrum(tetraploid) 18.469
CNS0095608Whole white alabastrum(tetraploid) 25.978
CNS0095609Whole white alabastrum(tetraploid) 317.511
CNS0095610Silvery flower (tetraploid) 18.998
CNS0095611Silvery flower (tetraploid) 26.220
CNS0095612Silvery flower (tetraploid) 35.446
CNS0095613Golden flower (tetraploid) 13.837
CNS0095614Golden flower (tetraploid) 27.376
CNS0095615Golden flower (tetraploid) 32.607
CRA001975CRR073297Stem 117.615
CRR073298Stem 217.649
CRR073299Stem 314.613
CRR073300Leaf 116.292
CRR073301Leaf 214.020
CRR073302Leaf 311.983
CRR073303Juvenile bud 17.525
CRR073304Juvenile bud 24.977
CRR073305Juvenile bud 36.603
CRR073306Third green 10.869
CRR073307Third green 20.970
CRR073308Third green 30.528
CRR073309Second white 11.078
CRR073310Second white 21.932
CRR073311Second white 31.125
CRR073312Silver flowering 10.305
CRR073313Silver flowering 20.508
CRR073314Silver flowering 30.737
CRR073315Gold flowering 15.598
CRR073316Gold flowering 28.835
CRR073317Gold flowering 33.071
CRR073318Tawny withering 113.997
CRR073319Tawny withering 212.803
CRR073320Tawny withering 313.686