Detail information of GWHGAAZE002851


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006652850.14.00435E-08PREDICTED: LOW QUALITY PROTEIN: autophagy-related protein 8B-like [Oryza brachyantha]
Swissprottr|Q69RC4|ATG8A_ORYSJ0.000000003Autophagy-related protein 8A (Precursor)
trEMBLtr|A0A059A0Z2|A0A059A0Z2_EUCGR0.00000003Autophagy-related protein {ECO:0000256|RuleBase:RU004384} (Fragment)
TAIR10AT1G62040.10.0000007Ubiquitin-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8740801787410513+
GWHAAZE00000001mRNA8740801787410513+
GWHAAZE00000001exon8740801787408908+
GWHAAZE00000001exon8740901887409070+
GWHAAZE00000001exon8741001987410137+
GWHAAZE00000001exon8741023987410513+
GWHAAZE00000001five_prime_UTR8740801787408908+
GWHAAZE00000001five_prime_UTR8740901887409070+
GWHAAZE00000001five_prime_UTR8741001987410137+
GWHAAZE00000001five_prime_UTR8741023987410243+
GWHAAZE00000001CDS8741024487410390+
GWHAAZE00000001three_prime_UTR8741039187410513+
Transcript Sequence

Network for GWHGAAZE002851

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0256GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase GOslim:molecular_function
GO:0009089 lysine biosynthetic process via diaminopimelate GOslim:biological_process
Ubiquitin_DWD family Ubiquitin_DWD family
map04136 Autophagy - other
map04810 Regulation of actin cytoskeleton
map04068 FoxO signaling pathway
map04621 NOD-like receptor signaling pathway
map04137 Mitophagy - animal
map04666 Fc gamma R-mediated phagocytosis
map04371 Apelin signaling pathway
map04139 Mitophagy - yeast
map04727 GABAergic synapse
map04140 Autophagy - animal
map04138 Autophagy - yeast
map04212 Longevity regulating pathway - worm


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02991.17Atg81236.00E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08341GABARAP, ATG8, LC3 Apelin signaling pathway map04371
FoxO signaling pathwaymap04068
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Mitophagy - animalmap04137
Mitophagy - yeastmap04139
NOD-like receptor signaling pathwaymap04621
GABAergic synapsemap04727
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.716
SRR3591706second leaf33.455
SRR3591707mature leaf64.013
SRR3591708Shoot apex53.186
SRR3591709Stem150.623
SRR3591710White floral bud89.611
SRR3591711White flower111.005
SRR3591712Green floral bud69.706
SRR3591713Yellow flower150.163
SRP173429 SRR8316895Juvenile bud stage 40.122
SRR8316896Juvenile bud stage 64.591
SRR8316897Juvenile bud stage 24.532
SRR8316894Third green stage 23.948
SRR8316900Third green stage 62.156
SRR8316901Third green stage 65.872
SRR8316898Complete white stage 46.693
SRR8316899Complete white stage 126.528
SRR8316903Complete white stage 66.562
SRR8316902Silver flowering stage55.795
SRR8316904Silver flowering stage65.075
SRR8316905Silver flowering stage34.651
SRR8316906Gold flowering stage 104.783
SRR8316907Gold flowering stage 96.367
SRR8316908Gold flowering stage 91.522
SRP132670SRR6706286Control41.467
SRR6706287Light intensity 50%40.215
SRR6706288Light intensity 20%42.384
CNP0000432CNS0095592Slightly white alabastrum(diploid) 174.538
CNS0095593Slightly white alabastrum(diploid) 275.865
CNS0095594Slightly white alabastrum(diploid) 374.663
CNS0095595Whole white alabastrum(diploid) 268.223
CNS0095596Whole white alabastrum(diploid) 360.967
CNS0095597Whole white alabastrum(diploid) 478.494
CNS0095598Silvery flower (diploied) 1136.506
CNS0095599Silvery flower (diploied) 2128.473
CNS0095600Silvery flower (diploied) 3135.358
CNS0095601Golden flower (diploid) 1139.743
CNS0095602Golden flower (diploid) 2135.011
CNS0095603Golden flower (diploid) 3136.927
CNS0095604Slightly white alabastrum(tetraploid) 174.553
CNS0095605Slightly white alabastrum(tetraploid) 277.394
CNS0095606Slightly white alabastrum(tetraploid) 396.721
CNS0095607Whole white alabastrum(tetraploid) 169.112
CNS0095608Whole white alabastrum(tetraploid) 273.117
CNS0095609Whole white alabastrum(tetraploid) 372.260
CNS0095610Silvery flower (tetraploid) 1200.744
CNS0095611Silvery flower (tetraploid) 2202.336
CNS0095612Silvery flower (tetraploid) 3133.326
CNS0095613Golden flower (tetraploid) 1228.275
CNS0095614Golden flower (tetraploid) 2187.810
CNS0095615Golden flower (tetraploid) 3196.545
CRA001975CRR073297Stem 129.485
CRR073298Stem 229.199
CRR073299Stem 334.266
CRR073300Leaf 129.316
CRR073301Leaf 230.325
CRR073302Leaf 327.803
CRR073303Juvenile bud 142.834
CRR073304Juvenile bud 228.705
CRR073305Juvenile bud 338.880
CRR073306Third green 116.601
CRR073307Third green 219.952
CRR073308Third green 315.799
CRR073309Second white 142.039
CRR073310Second white 238.696
CRR073311Second white 326.686
CRR073312Silver flowering 123.536
CRR073313Silver flowering 222.638
CRR073314Silver flowering 318.904
CRR073315Gold flowering 138.994
CRR073316Gold flowering 233.496
CRR073317Gold flowering 331.459
CRR073318Tawny withering 139.660
CRR073319Tawny withering 243.684
CRR073320Tawny withering 335.910