Detail information of GWHGAAZE002845


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009627563.13.6701E-99PREDICTED: ubiquitin thioesterase OTU1 [Nicotiana tomentosiformis]
trEMBLtr|A0A068UB41|A0A068UB41_COFCA3E-98Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313|EMBL:CDP05755.1}
TAIR10AT1G50670.12E-70OTU-like cysteine protease family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8723572187240646-
GWHAAZE00000001mRNA8723572187240646-
GWHAAZE00000001exon8724058287240646-
GWHAAZE00000001exon8724044387240488-
GWHAAZE00000001exon8723868487238792-
GWHAAZE00000001exon8723690887236999-
GWHAAZE00000001exon8723673287236794-
GWHAAZE00000001exon8723652887236605-
GWHAAZE00000001exon8723572187235738-
GWHAAZE00000001CDS8724058287240646-
GWHAAZE00000001CDS8724044387240488-
GWHAAZE00000001CDS8723868487238792-
GWHAAZE00000001CDS8723690887236999-
GWHAAZE00000001CDS8723673287236794-
GWHAAZE00000001CDS8723652887236605-
GWHAAZE00000001CDS8723572187235738-
Transcript Sequence

Network for GWHGAAZE002845

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02338.20OTU12992.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyOTU

KEGG pathway

KO Enzyme pathway mapID
K13719OTU1, YOD1 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf123.756
SRR3591706second leaf51.666
SRR3591707mature leaf22.282
SRR3591708Shoot apex60.338
SRR3591709Stem105.767
SRR3591710White floral bud97.810
SRR3591711White flower143.700
SRR3591712Green floral bud76.407
SRR3591713Yellow flower272.217
SRP173429 SRR8316895Juvenile bud stage 44.756
SRR8316896Juvenile bud stage 63.638
SRR8316897Juvenile bud stage 30.255
SRR8316894Third green stage 29.031
SRR8316900Third green stage 66.607
SRR8316901Third green stage 80.234
SRR8316898Complete white stage 54.347
SRR8316899Complete white stage 77.072
SRR8316903Complete white stage 84.153
SRR8316902Silver flowering stage52.568
SRR8316904Silver flowering stage66.886
SRR8316905Silver flowering stage38.858
SRR8316906Gold flowering stage 149.655
SRR8316907Gold flowering stage 130.831
SRR8316908Gold flowering stage 130.946
SRP132670SRR6706286Control63.273
SRR6706287Light intensity 50%77.326
SRR6706288Light intensity 20%79.683
CNP0000432CNS0095592Slightly white alabastrum(diploid) 157.393
CNS0095593Slightly white alabastrum(diploid) 256.745
CNS0095594Slightly white alabastrum(diploid) 349.989
CNS0095595Whole white alabastrum(diploid) 241.143
CNS0095596Whole white alabastrum(diploid) 343.608
CNS0095597Whole white alabastrum(diploid) 444.012
CNS0095598Silvery flower (diploied) 175.151
CNS0095599Silvery flower (diploied) 284.570
CNS0095600Silvery flower (diploied) 3172.849
CNS0095601Golden flower (diploid) 1114.283
CNS0095602Golden flower (diploid) 2169.988
CNS0095603Golden flower (diploid) 3167.497
CNS0095604Slightly white alabastrum(tetraploid) 148.914
CNS0095605Slightly white alabastrum(tetraploid) 248.473
CNS0095606Slightly white alabastrum(tetraploid) 366.861
CNS0095607Whole white alabastrum(tetraploid) 145.391
CNS0095608Whole white alabastrum(tetraploid) 242.514
CNS0095609Whole white alabastrum(tetraploid) 363.127
CNS0095610Silvery flower (tetraploid) 1214.512
CNS0095611Silvery flower (tetraploid) 2201.826
CNS0095612Silvery flower (tetraploid) 3172.485
CNS0095613Golden flower (tetraploid) 1306.238
CNS0095614Golden flower (tetraploid) 2263.328
CNS0095615Golden flower (tetraploid) 3309.456
CRA001975CRR073297Stem 154.891
CRR073298Stem 251.121
CRR073299Stem 333.911
CRR073300Leaf 148.291
CRR073301Leaf 245.035
CRR073302Leaf 344.476
CRR073303Juvenile bud 144.631
CRR073304Juvenile bud 246.495
CRR073305Juvenile bud 332.542
CRR073306Third green 154.707
CRR073307Third green 245.115
CRR073308Third green 336.609
CRR073309Second white 189.360
CRR073310Second white 296.329
CRR073311Second white 372.364
CRR073312Silver flowering 182.675
CRR073313Silver flowering 294.766
CRR073314Silver flowering 387.939
CRR073315Gold flowering 120.319
CRR073316Gold flowering 233.104
CRR073317Gold flowering 316.742
CRR073318Tawny withering 139.932
CRR073319Tawny withering 241.737
CRR073320Tawny withering 341.607