Gene detail

Detail information of GWHGAAZE002837

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010939275.1	0	PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Elaeis guineensis]
COG	NP_212961.1	4E-136	ATP-dependent helicase
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|I1H519\|I1H519_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G61220.1}
TAIR10	AT1G32490.2	0	RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	87132432	87134384	-
GWHAAZE00000001	mRNA	87132432	87134384	-
GWHAAZE00000001	exon	87132432	87134384	-
GWHAAZE00000001	CDS	87132432	87134384	-

Transcript Sequence
>GWHTAAZE002841 ATGGTCGCCCCACTTGAAAGATCATTCGCAAAACTAGCTTTTGAAAAGGTTCAGAATGAGAGAGAAGCTTTACCTATCTATCCATTTAGAGAAGAGCTGCTCAAAGCAGTTAATGATCATCAGATTCTTATTATTGTTGGCGAGACGGGTAGTGGAAAGACTACTCAGATACCCCAGTACCTTCACGAGGCGGGCTATACCAGACGAGGAAAGATTGGGTGTACTCAGCCACGTCGAGTTGCTGCTATAAGTATTGGTGCTAGAGTTGCTGGAGAAATGGGGGTGAAACTCGGGGACGAGGTCGGTTTCTCTATCCGTTTCGAGGAATGCACTTCGAATAAAACGATAATCAAATATATGACGGACGGAATGTTACTAAAGGAGTTCCTTAGTGAACCCGATCTTGCTAGCTACAGCGTTGTTATTTTGGATGAAGCCCATGAAAGAACGGTCCCAACTGATATTTTGTTTGGTTTATTAAAGGATCTTGCTCGGTTCCGGCCCGATCTCAAGTTGTTGATTTCAAGTGCTACTCTTGATGCAGACAAGTTCAGTGGTTTTTTCGATTGTGCTCTGGTTTTTAATATACCGGGGAGGCGGTACCCTGTTGATATTTACTACACGAAAGATCCAGAGCCCGATTACATGGATGCAGCAATACGGACAGCTCTACAAATCCACACGAAAGAACCGGCCGGTGATATATTGATTTTCCTCACGGGGCAGGATGAAATTGAGACTGCTGATGAGATTCTTAAAGAAAAAATGAGGGTGTTGGGGAATAAAGCGAAAGAGCTGATTATTTACCAACTTTATTCAGGCCTGCCTACTGAGTTTCAGGCGAAAATATTCCAACAGACCCCCCATGGCTCAAGAAAACTTGTATTGGCGACTAATATAGCAGAAACATCATTGACCATTGACGGGATCAAGTATGTTATTGACACTGGATTTTGCAAGTTGAACTCTTGCAGCCCACGAACTGGGACTGAGTCATTATTGGTCCACCCCATATCAAAGGCATCGGCAATGCAACGTGCGGGTCGAGCCGGACGAACTGGGCCGGGAAAGTGTTACCGTTTGTACACTGCCCACTCCTATAAACATGATTTTGATGAAAATACTACCCCGGAGATTCAGCGCAAGAACCTTGCTGACGTCGTGCTTACTTTAAAGATGCTTGGGGTTTCCAACTTGATAGATTTTGACTTCATGGATCCACCACCAACAGAAGCATTATTCAAAGCCTTGGAACTTCTCTTTTCACTTGGTGCACTAAGTAAAACTGGCGAGTTGACCACATTGGGTAGAAGAATGGCAGAGTTTCCTCTTGAACCCATGCTATCTAAAATGGTTGTTGCATCGGACAAGTACAAGTGCTCTGAAGAGATCATAACAATAGCCGCTATGCTCTCAGTTGGGAGCTCGATATTTTACTTCCCAAGGAACAAAAGGATACATGCCGAGAATGCAAAGAAGAATTTCCACAGAGGGAATGTTGGGGATCATATTGCATTGCTAAACGTGTATAATGCTTGGAAAGAAAGTAACTACTCGACCCAGTGGTGTTATGAAAACTATGTGCTTGCGAGGAGTATGAGACGGGCCAGAGATATAAGAGACCAGTTGGAGTTGCTGATGGACCGGGTTGAAATTAAACCAACATCGAACGCCAATGACTTGGAAGCAATAAAGAAGGCTATAACATCTGGTTTTTTCCCAAACGTGGCTAGGCTGCAGCAGTACCCGTTCTTCAAGACGGTTAAAAATCCCCAGACTGCTAAGGTGCATCCTGGCTCGGGTTTATCAGGGAAGAGTCCAAATTGGGTAGTGTACCATGAATTGGTTTTGACTAGTGATTTGTACATGCGGCAAGTGACCGAGATTAAGAAAGAGTGGCTGATTGAGGTGGCACCTCATTATCTTCAGCTCAATCATCTTGGATCAAAGTAG

Network for GWHGAAZE002837

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00271.32	Helicase_C	225	354	1.40E-15
PF04408.24	HA2	416	493	1.10E-21
PF07717.17	OB_NTP_bind	564	641	3.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12813	DHX16	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.031
	SRR3591706	second leaf	1.167
	SRR3591707	mature leaf	2.803
	SRR3591708	Shoot apex	2.668
	SRR3591709	Stem	3.554
	SRR3591710	White floral bud	6.194
	SRR3591711	White flower	8.309
	SRR3591712	Green floral bud	7.161
	SRR3591713	Yellow flower	10.478
SRP173429	SRR8316895	Juvenile bud stage	2.793
	SRR8316896	Juvenile bud stage	3.364
	SRR8316897	Juvenile bud stage	2.095
	SRR8316894	Third green stage	2.106
	SRR8316900	Third green stage	6.433
	SRR8316901	Third green stage	5.746
	SRR8316898	Complete white stage	2.091
	SRR8316899	Complete white stage	7.245
	SRR8316903	Complete white stage	5.669
	SRR8316902	Silver flowering stage	4.240
	SRR8316904	Silver flowering stage	6.091
	SRR8316905	Silver flowering stage	2.610
	SRR8316906	Gold flowering stage	9.723
	SRR8316907	Gold flowering stage	7.663
	SRR8316908	Gold flowering stage	9.771
SRP132670	SRR6706286	Control	5.890
	SRR6706287	Light intensity 50%	5.971
	SRR6706288	Light intensity 20%	6.424
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.100
	CNS0095593	Slightly white alabastrum(diploid) 2	4.104
	CNS0095594	Slightly white alabastrum(diploid) 3	4.550
	CNS0095595	Whole white alabastrum(diploid) 2	3.777
	CNS0095596	Whole white alabastrum(diploid) 3	3.867
	CNS0095597	Whole white alabastrum(diploid) 4	4.715
	CNS0095598	Silvery flower (diploied) 1	5.376
	CNS0095599	Silvery flower (diploied) 2	4.154
	CNS0095600	Silvery flower (diploied) 3	10.051
	CNS0095601	Golden flower (diploid) 1	5.933
	CNS0095602	Golden flower (diploid) 2	10.938
	CNS0095603	Golden flower (diploid) 3	9.351
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.612
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.247
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.536
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.210
	CNS0095610	Silvery flower (tetraploid) 1	12.073
	CNS0095611	Silvery flower (tetraploid) 2	10.511
	CNS0095612	Silvery flower (tetraploid) 3	8.565
	CNS0095613	Golden flower (tetraploid) 1	8.180
	CNS0095614	Golden flower (tetraploid) 2	11.467
	CNS0095615	Golden flower (tetraploid) 3	11.077
CRA001975	CRR073297	Stem 1	6.401
	CRR073298	Stem 2	5.600
	CRR073299	Stem 3	2.984
	CRR073300	Leaf 1	7.825
	CRR073301	Leaf 2	3.724
	CRR073302	Leaf 3	3.388
	CRR073303	Juvenile bud 1	2.447
	CRR073304	Juvenile bud 2	2.473
	CRR073305	Juvenile bud 3	3.668
	CRR073306	Third green 1	1.339
	CRR073307	Third green 2	0.966
	CRR073308	Third green 3	2.345
	CRR073309	Second white 1	1.046
	CRR073310	Second white 2	2.046
	CRR073311	Second white 3	2.942
	CRR073312	Silver flowering 1	3.361
	CRR073313	Silver flowering 2	1.962
	CRR073314	Silver flowering 3	2.581
	CRR073315	Gold flowering 1	0.839
	CRR073316	Gold flowering 2	2.748
	CRR073317	Gold flowering 3	0.608
	CRR073318	Tawny withering 1	2.894
	CRR073319	Tawny withering 2	4.527
	CRR073320	Tawny withering 3	2.627