Detail information of GWHGAAZE002826


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009610361.10PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial-like [Nicotiana tomentosiformis]
COGYP_004626539.18E-51DNA polymerase I
Swissprottr|F4I6M1|POLIA_ARATH0DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBLtr|F6H1W3|F6H1W3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46227.1}
TAIR10AT1G50840.10polymerase gamma 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8697438686980337-
GWHAAZE00000001mRNA8697438686980337-
GWHAAZE00000001exon8697438686974547-
GWHAAZE00000001exon8697511886975207-
GWHAAZE00000001exon8697527686975488-
GWHAAZE00000001exon8697559486975686-
GWHAAZE00000001exon8697604886976242-
GWHAAZE00000001exon8697642086976512-
GWHAAZE00000001exon8697737586977470-
GWHAAZE00000001exon8697781186978255-
GWHAAZE00000001exon8697840886979063-
GWHAAZE00000001exon8697924486979435-
GWHAAZE00000001exon8697965186980337-
GWHAAZE00000001CDS8697965186980337-
GWHAAZE00000001CDS8697924486979435-
GWHAAZE00000001CDS8697840886979063-
GWHAAZE00000001CDS8697781186978255-
GWHAAZE00000001CDS8697737586977470-
GWHAAZE00000001CDS8697642086976512-
GWHAAZE00000001CDS8697604886976242-
GWHAAZE00000001CDS8697559486975686-
GWHAAZE00000001CDS8697527686975488-
GWHAAZE00000001CDS8697511886975207-
GWHAAZE00000001CDS8697438686974547-
Transcript Sequence

Network for GWHGAAZE002826

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01612.21DNA_pol_A_exo12594151.10E-11
PF00476.21DNA_pol_A6309701.60E-71
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02335polA DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Homologous recombinationmap03440

Gene Ontology

GO term OntologyName
GO:0006139biological_processnucleobase-containing compound metabolic process
GO:0006260biological_processDNA replication
GO:0006261biological_processDNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.114
SRR3591706second leaf11.322
SRR3591707mature leaf11.923
SRR3591708Shoot apex15.931
SRR3591709Stem9.220
SRR3591710White floral bud7.282
SRR3591711White flower11.672
SRR3591712Green floral bud10.367
SRR3591713Yellow flower8.891
SRP173429 SRR8316895Juvenile bud stage 8.634
SRR8316896Juvenile bud stage 9.346
SRR8316897Juvenile bud stage 4.495
SRR8316894Third green stage 4.022
SRR8316900Third green stage 10.132
SRR8316901Third green stage 9.453
SRR8316898Complete white stage 2.392
SRR8316899Complete white stage 12.332
SRR8316903Complete white stage 4.612
SRR8316902Silver flowering stage2.119
SRR8316904Silver flowering stage3.897
SRR8316905Silver flowering stage1.612
SRR8316906Gold flowering stage 5.285
SRR8316907Gold flowering stage 6.053
SRR8316908Gold flowering stage 4.114
SRP132670SRR6706286Control6.903
SRR6706287Light intensity 50%7.884
SRR6706288Light intensity 20%9.181
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.149
CNS0095593Slightly white alabastrum(diploid) 24.250
CNS0095594Slightly white alabastrum(diploid) 33.316
CNS0095595Whole white alabastrum(diploid) 23.979
CNS0095596Whole white alabastrum(diploid) 34.194
CNS0095597Whole white alabastrum(diploid) 43.452
CNS0095598Silvery flower (diploied) 19.692
CNS0095599Silvery flower (diploied) 26.924
CNS0095600Silvery flower (diploied) 311.489
CNS0095601Golden flower (diploid) 16.061
CNS0095602Golden flower (diploid) 211.445
CNS0095603Golden flower (diploid) 310.714
CNS0095604Slightly white alabastrum(tetraploid) 15.043
CNS0095605Slightly white alabastrum(tetraploid) 23.549
CNS0095606Slightly white alabastrum(tetraploid) 310.212
CNS0095607Whole white alabastrum(tetraploid) 12.309
CNS0095608Whole white alabastrum(tetraploid) 21.605
CNS0095609Whole white alabastrum(tetraploid) 37.176
CNS0095610Silvery flower (tetraploid) 17.954
CNS0095611Silvery flower (tetraploid) 210.766
CNS0095612Silvery flower (tetraploid) 35.592
CNS0095613Golden flower (tetraploid) 12.061
CNS0095614Golden flower (tetraploid) 25.736
CNS0095615Golden flower (tetraploid) 32.892
CRA001975CRR073297Stem 19.771
CRR073298Stem 28.681
CRR073299Stem 38.080
CRR073300Leaf 18.010
CRR073301Leaf 26.977
CRR073302Leaf 35.504
CRR073303Juvenile bud 17.109
CRR073304Juvenile bud 24.023
CRR073305Juvenile bud 38.830
CRR073306Third green 10.725
CRR073307Third green 20.443
CRR073308Third green 30.896
CRR073309Second white 13.235
CRR073310Second white 23.199
CRR073311Second white 33.298
CRR073312Silver flowering 11.999
CRR073313Silver flowering 23.201
CRR073314Silver flowering 31.786
CRR073315Gold flowering 19.067
CRR073316Gold flowering 213.060
CRR073317Gold flowering 39.776
CRR073318Tawny withering 16.135
CRR073319Tawny withering 27.168
CRR073320Tawny withering 36.608