Gene detail

Detail information of GWHGAAZE002799

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05798.1	0	unnamed protein product [Coffea canephora]
COG	YP_004494567.1	1E-108	putative ABC transporter permease/ATP-binding protein
Swissprot	tr\|Q9LHD1\|AB15B_ARATH	0	ABC transporter B family member 15
trEMBL	tr\|A0A068UDU3\|A0A068UDU3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05798.1}
TAIR10	AT3G28345.1	0	ABC transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86457250	86463064	+
GWHAAZE00000001	mRNA	86457250	86463064	+
GWHAAZE00000001	exon	86457250	86457359	+
GWHAAZE00000001	exon	86458489	86458532	+
GWHAAZE00000001	exon	86458648	86458835	+
GWHAAZE00000001	exon	86458956	86459413	+
GWHAAZE00000001	exon	86459512	86460052	+
GWHAAZE00000001	exon	86460216	86462155	+
GWHAAZE00000001	exon	86462689	86463064	+
GWHAAZE00000001	CDS	86457250	86457359	+
GWHAAZE00000001	CDS	86458489	86458532	+
GWHAAZE00000001	CDS	86458648	86458835	+
GWHAAZE00000001	CDS	86458956	86459413	+
GWHAAZE00000001	CDS	86459512	86460052	+
GWHAAZE00000001	CDS	86460216	86462155	+
GWHAAZE00000001	CDS	86462689	86463064	+

Transcript Sequence
>GWHTAAZE002803 ATGGGGAATAAAGATGGGATGTTTAGGTATGCAGATGGGAAAGACAAGTTTTTGATGATGATGGGGACTTTGGGTAGCATGGGAGATGGACTCCAAGTCCCTCTAATGATGCTGCTCTATGTTGCAATTGGAGTTGGACTATCTGCCTTTGTTGAGGGACTCTGTTGGGCAAGAACAGCGGAGCGACAGACTTCTCAAATGAGATTAGAGTACCTTAAATCTGTTCTCAGACAAGACGTTGGTTTCTTTGACACCCAAGCAGCCGATTCTTCCACAACTTACCAAGTTGTTTCCACCATCTCCTCTGATTCCAATACAATCCAAGTTGCCATAGGCGAAAAGATGCCCGATTGCCTGGCATATATGTCATCTTTCTTCTTCTGCATTGTATTTGCCTTCACATTATCATGGAAGCTTACACTGGCTGCCCTTCCATTCTCATTAATGTTCATTATCCCGGGGCTTGGATTTGGAAAAATGATGATGGATGTGGGAATGAAGATGATTGAATCTTACGGAGTTGCTGGTGGGATTGCAGAGCAAGCTGTTTCTTCAATAAGAACTGTGTATTCCTATGTTGGAGAGAGTCAAACTCTCCATAAGTTTAGTCAAGCGCTTGAGATAACTATGGAACTAGGAATTAAACAAGGTCTTGCTAGAGGATTGATGATGGGAAGCATGGGTGTCATTTACGTTAGCTGGGGTTTTCAGGCTTGGGTGGGCTCTATTCTAGTTACCAAGAAAGGAGAAAAGGGTGGCGATATTTTTGTAGCTGGATTCAATGTGCTAATGGGAGGATTGAATATTTTGACTGCACTTCCAAATCTTACCGCAATCACTGAGGCAAAAGCTGCAGCTACTCGGATTACTGAGATGATAGATCGGCAACCAGGCATAGACTCTGATGATAAAAAGGGGAAGGCACTATCATACGTGAGAGGAGAAATCGAGTTCCAGGGTGTCTACTTTAGTTACCCATCAAGACCAGATACGCCTATTCTACAAGGTTTGAATCTGAGAGTTCCGGCTGGCAAAACTGTAGGTTTTGTTGGAGGGAGCGGTTCTGGCAAATCCACCACTATTTCATTGCTTCAAAGATTTTACGATCCCATTGAAGGCGAAATTTTATTGGATGGATACAAGATAAAAAAACTTCATCTTAAATGGTTGAGATCCCAAATGGGGCTGGTAAATCAAGAACCAATTCTCTTTGCGACATCTATAAAGGAGAATATACTGTTTGGAAAAGAAGGTGCGACAATGGACGATGTAACTGAAGCAGCAAAGGGTGCAAATGCACATGACTTTATTGTTAAGTTACCAGATGGATATGAAACTCAAGTTGGGCAATTTGGATTTCAATTATCTGGAGGACAAAAGCAAAGAATCGCCATAGCGAGGGCATTGATCAGAGACCCAAAAATCTTGCTTCTTGATGAAGCTACTAGTGCACTGGACTCTCAATCTGAAAGAATTGTACAAGAGGCCATTGACAAAGCATCTGAAGGGAGGACCACAATCATCATAGCTCACCGTCTCTCCACAATTAGAATGGCTAATATAATTGTGGTCCTTCAAGCAGGAAAGGTAGTCGAATCAGGTTTGCATAATGAGCTGATGCAAATGAGTGATGGACAAGGAGGCGAATACTTCCGTATGGTACAACTGCAAAATTCGGCCCCGCAAAGTGACGTTCCAAATTATCAAAGCGATACAAGAAACCACCACAGGATTCCACCGAGCCCAATGAGTGTGAGATCAAGCGCCCCTAGCACTCCAGCACTGAACCCGTTTAGCCCAGCATTATCCATTAGTGCACCGTACTCGGTCCAATTCGAGGACGGTTATGACAGTGATGACGAAGACTTGAACAAACGAGCTTATCCTACACCATCCCAGTTCCGGTTGTTGAAAATGAATGCACCTGAGTGGGGAAGAGCTTTGCTTGGGTGCATAGGGGCTATAGGCTCTGGAGCAGTTCAACCAATCAATGCCTACTGCGTGGGCGCACTTATATCAGTTTACTTTAAAACCGATAAGGCTTCCGTCAGATCCGATGCAAGATTTTACTCCATCCTATTCTTAGGCCTTGGAGTTTTCAACTTTGTTACTAGTCTTCTTCAACACTACAATTTTGCTTTCATGGGTGAAAAGTTAACGAGAAGGGTAAGGGAGAAGCTGCTCACAAAGCTTCTAACTTTCGAGATTGGCTGGTTCGATCAAGATGATAATACGAGTGCAGCCATTTGTGCACGGTTATCAACCGAAGCTAACATGGTTCGGTCCCTAGTTGGGGACCGTATGTCATTGCTGACTCAAGCATTCTTTGGGGCAACCTTTGCTTATGCCTTGGGACTTGTGCTGACATGGAGGCTAGCACTCGTGATGATGGCAGCACAGCCGTTACTAATCGGAAGCTTTTACGCTAGAAGTGTGCTGATGAGGAGTTTGTCCGGAAAAGCCCAAAAAGCCCAAAAAGAAGGAAGCCAACTAGCCAGTGAAGCTGTCATTAACCATAGAACCATAACCGCCTTCTCTTCTCAGAAACGTATTGTGGGGCTCTTTGCGGCGACTTTGGAGGGCCCTAAGAAGGAGAGTATTAGGCAATCTTGGTTTTCAGGCTTTGGCCTTTTTAGCTCCCAATTTTTGGCAGCAGCTTCTACAGCTTTAGCGTACTGGTACGGGGGAAGGCTTTTGACACAAGGGCTAATAGAACCAGAGCGACTTTTTCAAGCATTTTTGGTACTGCTATTTACTGCGTATACCATTGCTGAGGCTGGAAGCATGACCAAAGATATATCGAGAGGAAGCAATGCCGTTAGTTCAGTTTTCGCTCTCCTAGACAGGACTAGTGAGATTGTTCCGGATAGTTCATGGGGGCTCGATGCTACAAAGTCAAACATAAGGGGCCGTGTAGAGCTGAAAAATGTGTTCTTTTCTTATCCATCAAGACCAGATCAGATGATTTTTAAGGGCCTGAACCTTAAAATCAGAGGAGGAACGACAGTAGCACTAGTGGGGCCGAGTGGTTCAGGAAAATCTACTGTTATTGGGCTCATTGAGAGATTTTATGACCCAACAAAGGGAGCGGTGTATGTTGATGAACGAGATATTAAGGACTATTGTTTGAGAACTCTGAGATCACATATTGCATTAGTCAGTCAGGAGCCGACCCTTTTTGCAGGTACTATACATGATAACATTGCCTATGGGAGAAAGGATGCTAAAGAATCTGAGATAAGGAAGGCTGCGATGCTTGCCAATGCGCATGAATTTATAAGTGGAATGAAAGATGGGTATGATACTTACTGTGGAGAGAGAGGGGTTCAGCTATCGGGAGGTCAGAAACAAAGAGTAGCACTAGCTCGGGCTATACTAAAGAACCCGTCGATCCTGCTGCTGGACGAGGCAACCAGTGCCCTTGATAGTGTGTCGGAGAGCTTAGTTCAAGAAGCACTCGAGAAGATGATGAATGGCCGAACATGTATTGTGGTGGCTCACCGTCTATCAACAATACAAAAATCTGATTCAATTGCTGTGATCAAGGATGGAAAAGTTGCAGAGCAAGGGTCACATTCTGATCTCCTTTCAATACGCGGTGGAGCTTACTATTCTCTTGTTAAACCACAACAAGGTGGCGGTTCTCCTTACCGGTAA

Network for GWHGAAZE002799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	30	266	2.80E-38
PF00005.28	ABC_tran	334	483	8.40E-33
PF00664.24	ABC_membrane	648	920	4.40E-50
PF00005.28	ABC_tran	991	1139	7.90E-34

Protein Sequence

>GWHPAAZE002801
MGNKDGMFRYADGKDKFLMMMGTLGSMGDGLQVPLMMLLYVAIGVGLSAFVEGLCWARTAERQTSQMRLEYLKSVLRQDVGFFDTQAADSSTTYQVVSTISSDSNTIQVAIGEKMPDCLAYMSSFFFCIVFAFTLSWKLTLAALPFSLMFIIPGLGFGKMMMDVGMKMIESYGVAGGIAEQAVSSIRTVYSYVGESQTLHKFSQALEITMELGIKQGLARGLMMGSMGVIYVSWGFQAWVGSILVTKKGEKGGDIFVAGFNVLMGGLNILTALPNLTAITEAKAAATRITEMIDRQPGIDSDDKKGKALSYVRGEIEFQGVYFSYPSRPDTPILQGLNLRVPAGKTVGFVGGSGSGKSTTISLLQRFYDPIEGEILLDGYKIKKLHLKWLRSQMGLVNQEPILFATSIKENILFGKEGATMDDVTEAAKGANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERIVQEAIDKASEGRTTIIIAHRLSTIRMANIIVVLQAGKVVESGLHNELMQMSDGQGGEYFRMVQLQNSAPQSDVPNYQSDTRNHHRIPPSPMSVRSSAPSTPALNPFSPALSISAPYSVQFEDGYDSDDEDLNKRAYPTPSQFRLLKMNAPEWGRALLGCIGAIGSGAVQPINAYCVGALISVYFKTDKASVRSDARFYSILFLGLGVFNFVTSLLQHYNFAFMGEKLTRRVREKLLTKLLTFEIGWFDQDDNTSAAICARLSTEANMVRSLVGDRMSLLTQAFFGATFAYALGLVLTWRLALVMMAAQPLLIGSFYARSVLMRSLSGKAQKAQKEGSQLASEAVINHRTITAFSSQKRIVGLFAATLEGPKKESIRQSWFSGFGLFSSQFLAAASTALAYWYGGRLLTQGLIEPERLFQAFLVLLFTAYTIAEAGSMTKDISRGSNAVSSVFALLDRTSEIVPDSSWGLDATKSNIRGRVELKNVFFSYPSRPDQMIFKGLNLKIRGGTTVALVGPSGSGKSTVIGLIERFYDPTKGAVYVDERDIKDYCLRTLRSHIALVSQEPTLFAGTIHDNIAYGRKDAKESEIRKAAMLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRVALARAILKNPSILLLDEATSALDSVSESLVQEALEKMMNGRTCIVVAHRLSTIQKSDSIAVIKDGKVAEQGSHSDLLSIRGGAYYSLVKPQQGGGSPYR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.538
	SRR3591706	second leaf	0.130
	SRR3591707	mature leaf	0.159
	SRR3591708	Shoot apex	0.599
	SRR3591709	Stem	0.611
	SRR3591710	White floral bud	0.423
	SRR3591711	White flower	0.351
	SRR3591712	Green floral bud	0.371
	SRR3591713	Yellow flower	0.193
SRP173429	SRR8316895	Juvenile bud stage	1.855
	SRR8316896	Juvenile bud stage	1.931
	SRR8316897	Juvenile bud stage	0.611
	SRR8316894	Third green stage	1.006
	SRR8316900	Third green stage	1.273
	SRR8316901	Third green stage	1.852
	SRR8316898	Complete white stage	0.174
	SRR8316899	Complete white stage	1.824
	SRR8316903	Complete white stage	1.324
	SRR8316902	Silver flowering stage	0.864
	SRR8316904	Silver flowering stage	0.972
	SRR8316905	Silver flowering stage	0.537
	SRR8316906	Gold flowering stage	1.538
	SRR8316907	Gold flowering stage	1.598
	SRR8316908	Gold flowering stage	0.312
SRP132670	SRR6706286	Control	2.387
	SRR6706287	Light intensity 50%	2.716
	SRR6706288	Light intensity 20%	2.675
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.369
	CNS0095593	Slightly white alabastrum(diploid) 2	1.736
	CNS0095594	Slightly white alabastrum(diploid) 3	1.184
	CNS0095595	Whole white alabastrum(diploid) 2	0.960
	CNS0095596	Whole white alabastrum(diploid) 3	0.695
	CNS0095597	Whole white alabastrum(diploid) 4	0.968
	CNS0095598	Silvery flower (diploied) 1	1.879
	CNS0095599	Silvery flower (diploied) 2	1.936
	CNS0095600	Silvery flower (diploied) 3	1.991
	CNS0095601	Golden flower (diploid) 1	2.007
	CNS0095602	Golden flower (diploid) 2	2.328
	CNS0095603	Golden flower (diploid) 3	2.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.785
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.439
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.855
	CNS0095610	Silvery flower (tetraploid) 1	1.099
	CNS0095611	Silvery flower (tetraploid) 2	1.313
	CNS0095612	Silvery flower (tetraploid) 3	1.078
	CNS0095613	Golden flower (tetraploid) 1	0.361
	CNS0095614	Golden flower (tetraploid) 2	0.851
	CNS0095615	Golden flower (tetraploid) 3	0.245
CRA001975	CRR073297	Stem 1	3.250
	CRR073298	Stem 2	2.885
	CRR073299	Stem 3	0.512
	CRR073300	Leaf 1	2.618
	CRR073301	Leaf 2	2.487
	CRR073302	Leaf 3	0.343
	CRR073303	Juvenile bud 1	0.617
	CRR073304	Juvenile bud 2	0.193
	CRR073305	Juvenile bud 3	0.402
	CRR073306	Third green 1	0.061
	CRR073307	Third green 2	0.061
	CRR073308	Third green 3	0.074
	CRR073309	Second white 1	0.018
	CRR073310	Second white 2	0.029
	CRR073311	Second white 3	0.092
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.086
	CRR073314	Silver flowering 3	0.108
	CRR073315	Gold flowering 1	0.286
	CRR073316	Gold flowering 2	0.958
	CRR073317	Gold flowering 3	0.148
	CRR073318	Tawny withering 1	0.392
	CRR073319	Tawny withering 2	0.896
	CRR073320	Tawny withering 3	0.702