Gene detail

Detail information of GWHGAAZE002767

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006370371.1	0	S-locus protein kinase [Populus trichocarpa]
COG	YP_001958461.1	0.000000008	hypothetical protein Aasi_1443
Swissprot	tr\|O81832\|Y4729_ARATH	2E-178	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|U5GTQ6\|U5GTQ6_POPTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT4G27290.1	3E-147	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85882518	85886247	-
GWHAAZE00000001	mRNA	85882518	85886247	-
GWHAAZE00000001	exon	85882518	85882829	-
GWHAAZE00000001	exon	85883990	85884202	-
GWHAAZE00000001	exon	85884349	85884494	-
GWHAAZE00000001	exon	85884577	85884735	-
GWHAAZE00000001	exon	85884984	85886247	-
GWHAAZE00000001	CDS	85884984	85886247	-
GWHAAZE00000001	CDS	85884577	85884735	-
GWHAAZE00000001	CDS	85884349	85884494	-
GWHAAZE00000001	CDS	85883990	85884202	-
GWHAAZE00000001	CDS	85882518	85882829	-

Transcript Sequence
>GWHTAAZE002771 ATGGGAGCCTACTCTTTCGCCATAGTTTTTCTCTTATCCACTTTATTTTCCATCTCAAAATTCTCAAATGCAACAGACACCATAACGGCAGCTCAATCCATTACAGATGGTGACACCATAGTTTCCTCAGATGGAAGCTTTGAAATGGGATTTTTCAGCCCAGGTAATTCCAACAGGTACCTTGGTATTTGGTACAAGAAAATACCTTCTAGGACTGTAGTTTGGGTTGCCAATAGACAAATACCACTTACCCATAATGCATCAGAAGGTGTGTTGAAGCTTCTCGATCCACCAGGACTCCTGGTTCTTCTTAATGCAACCAACAGCATCATATGGTCTTCAAATACTTCAAGATCAAATGCTGCAAATACTTCAGTTGCACAACTTTTAGACTCGGGCAATCTTGTAGTAAAAGATGCTGGCACTGGCATGGCAGAGAATTTCTTCCACTGGCAGAGTTTTGATTACCCGGGTGACACACTTTTACCAGGCATGAAGCTGGGAAAAGACTTGGTAACCGGGCTGGAGAGGCATATTTCATCGTGGAAGAGCTATAGTGATGCAGCCCAAGGTGAGTTTACCTATGGTTTGGATCTCAATGGATATCCTCAAGCGATTCTTAAAAAAGGTTCAGATGAGATATATCGATTAGGATCATGGAACGGGTTGATGTATAGTGGGATGCTATCCTCATTGCCGATTCCCATTTACACGTACCAATTTGTTTTCACTAAGGAGGAGATTTACCACAGTTATGTGCTCATTAACAGCTCAATTATATCGAGGGTGTGTCTGAGTCCAGAAGGACTTATACAGCGATGGGTGTGGATTCATCGAACACAAAGCTGGCTCCAAATCAGTACTGCACCTGTAGATACCTGTGATAATTACTTGCCATGTGGTGCTTATGGCAACTGTAACATTAACAAGTCCCCTGCATGTGGGTGTTTGGATAAATTTGAGAAGAAACCAGGAAAGGGTTGTGTTCGTAAAACAGCCTTGAATTGCCAAGTTGGTGATGGGTTTTTGAAGTACTCTACCATCAAATTGCCAGACACGCGCTATTCATGGTTCAATCAGACGATGACTACTAAGGAATGCGAGATTATGTGCCTGAGGAACTGCTCATGCATGGCTTACGCAAATTCAGACATAAGAGGAAATGGAAGTGGATGCTTGCTTTGGTTTGGGGACCTGATTGACATCAGGGAGTTAAATGAACGCGTTCAAGATATCTACATAAGGGTGGCATCCACTGAATTAGGGAACCCTACACCCGCTCAATTTGGCTCCAGCAGGAAGAGAGGAGAAATCATCAAAGTGGGCTTGCCGCTGTTAATTGTAATGGCTCTGTTAGGGACGGCCTTCGCAGTGTATCTGTGGAAAAAGAAAAAGATGATTTTTATGTTGCTGATAAGACGAGGTATACTGGGACAAGGAAACACAAATAAAACTCAGAAGGAAGATATGGAACTACCATTGTTTGGCTTATCAAAAATAACAACTGCTACTAATAACTTTTCACTTCACAATAAGCTCGGAGAGGGTGGATTTGGACCAGTTTATAAGGGTGTTCTGGAAGGACGAGAAATAGCCGTGAAGCGGCTGTCCAAGACTTCCATGCAAGGGTTTGACGAGTTCAGGAATGAAGTTATTTGTATCGCCAAACTTCAGCATAGAAATCTTGTGAAGCTTTTAGGATGTTGTATCCAAGGAGATGAAATGTTGTTGATATACGAATACATGCCCAACGGAAGCCTGGACGCATTTATATTTGGTTTGGCATGGAGACTCTATAAAGAAGGCAGGTCAATGGAACTGATCGATCGTGCTGCTTTAGGCGAATCAAGTTACGTAGATGATGAAGTGGTACGATCAATAGAAGTGGGTTTATTATGTGTGCAACAATGCCCGGAAGATAGGCCTACCATGTCGTCAGTGGTACAGATGTTGAGTAGTAAAGTTGCAATCCCGCAACCTAAAGAGCCTGGTTTTTTCACTGAAAGGAATCTACATAAATCTCAACGTTCTGCAAGCACTAGTACGCCAATTTCAACCAATGACGTCACCTTCTCACTATTAGATGGTCGGTAG

Network for GWHGAAZE002767

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	72	183	2.40E-33
PF00954.21	S_locus_glycop	215	323	1.70E-26
PF08276.12	PAN_2	336	402	1.20E-22
PF07714.18	PK_Tyr_Ser-Thr	508	591	9.50E-17
PF11883.9	DUF3403	652	697	9.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.733
	SRR3591706	second leaf	15.142
	SRR3591707	mature leaf	8.597
	SRR3591708	Shoot apex	3.969
	SRR3591709	Stem	0.993
	SRR3591710	White floral bud	2.373
	SRR3591711	White flower	1.028
	SRR3591712	Green floral bud	5.042
	SRR3591713	Yellow flower	0.184
SRP173429	SRR8316895	Juvenile bud stage	13.343
	SRR8316896	Juvenile bud stage	18.819
	SRR8316897	Juvenile bud stage	4.604
	SRR8316894	Third green stage	8.481
	SRR8316900	Third green stage	15.986
	SRR8316901	Third green stage	14.948
	SRR8316898	Complete white stage	1.823
	SRR8316899	Complete white stage	22.350
	SRR8316903	Complete white stage	3.332
	SRR8316902	Silver flowering stage	1.036
	SRR8316904	Silver flowering stage	1.762
	SRR8316905	Silver flowering stage	0.483
	SRR8316906	Gold flowering stage	1.414
	SRR8316907	Gold flowering stage	0.986
	SRR8316908	Gold flowering stage	1.642
SRP132670	SRR6706286	Control	19.840
	SRR6706287	Light intensity 50%	24.211
	SRR6706288	Light intensity 20%	27.027
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.219
	CNS0095593	Slightly white alabastrum(diploid) 2	5.036
	CNS0095594	Slightly white alabastrum(diploid) 3	3.400
	CNS0095595	Whole white alabastrum(diploid) 2	2.605
	CNS0095596	Whole white alabastrum(diploid) 3	2.559
	CNS0095597	Whole white alabastrum(diploid) 4	4.188
	CNS0095598	Silvery flower (diploied) 1	5.469
	CNS0095599	Silvery flower (diploied) 2	4.432
	CNS0095600	Silvery flower (diploied) 3	1.706
	CNS0095601	Golden flower (diploid) 1	2.107
	CNS0095602	Golden flower (diploid) 2	2.603
	CNS0095603	Golden flower (diploid) 3	2.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.767
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.388
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.634
	CNS0095610	Silvery flower (tetraploid) 1	2.363
	CNS0095611	Silvery flower (tetraploid) 2	3.122
	CNS0095612	Silvery flower (tetraploid) 3	1.092
	CNS0095613	Golden flower (tetraploid) 1	0.783
	CNS0095614	Golden flower (tetraploid) 2	0.740
	CNS0095615	Golden flower (tetraploid) 3	0.881
CRA001975	CRR073297	Stem 1	26.774
	CRR073298	Stem 2	24.141
	CRR073299	Stem 3	14.885
	CRR073300	Leaf 1	28.757
	CRR073301	Leaf 2	20.878
	CRR073302	Leaf 3	19.419
	CRR073303	Juvenile bud 1	19.005
	CRR073304	Juvenile bud 2	23.804
	CRR073305	Juvenile bud 3	18.137
	CRR073306	Third green 1	5.753
	CRR073307	Third green 2	1.004
	CRR073308	Third green 3	2.967
	CRR073309	Second white 1	0.420
	CRR073310	Second white 2	0.432
	CRR073311	Second white 3	0.852
	CRR073312	Silver flowering 1	0.068
	CRR073313	Silver flowering 2	0.054
	CRR073314	Silver flowering 3	0.506
	CRR073315	Gold flowering 1	19.189
	CRR073316	Gold flowering 2	18.141
	CRR073317	Gold flowering 3	17.721
	CRR073318	Tawny withering 1	0.094
	CRR073319	Tawny withering 2	0.108
	CRR073320	Tawny withering 3	0.112