Gene detail

Detail information of GWHGAAZE002766

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095279.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Sesamum indicum]
Swissprot	tr\|O81832\|Y4729_ARATH	3E-162	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|F6H2A8\|F6H2A8_VITVI	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT4G27290.1	1E-137	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85863051	85866631	-
GWHAAZE00000001	mRNA	85863051	85866631	-
GWHAAZE00000001	exon	85863051	85863078	-
GWHAAZE00000001	exon	85863105	85863583	-
GWHAAZE00000001	exon	85863687	85863836	-
GWHAAZE00000001	exon	85865041	85865084	-
GWHAAZE00000001	exon	85865335	85866631	-
GWHAAZE00000001	CDS	85865335	85866631	-
GWHAAZE00000001	CDS	85865041	85865084	-
GWHAAZE00000001	CDS	85863687	85863836	-
GWHAAZE00000001	CDS	85863278	85863583	-
GWHAAZE00000001	three_prime_UTR	85863105	85863277	-
GWHAAZE00000001	three_prime_UTR	85863051	85863078	-

Transcript Sequence
>GWHTAAZE002770 ATGAACAACGCATCAATCCGAGGCGGCTTCTTCGCTATAGCTTTTCTCTTATCCTCTTCACTTTTCATAGCCAAATTCTCAATTGCAGAGGACAGCATAACAACAACTCGTTTCATCAAAGACGGCGAAACCATAATCTCGTCAGGTGGAATCTTCGAAATGGGATTTTTCAGCCCGGGAAATTCCAAGAACAGGTATGTGGGTATATGGTACAAGAAAATACCTGATAGAACTGTTGTTTGGGTTGCTAATAGAGAAACTCCACTTACCAATACATCAGAAGCTGTCCTAAAGGTACTCGACGAAGGAATTCTGGTCCTTGTTAATGGCACAGATAACATCATATGGTCTACTAATACATCAAGATCCTCTGCAAGTAACCCGGCGGCACGAGTTTTGGACTACGGAAATCTTGTTGTGATGGACGAAAATGATGGCAACCCACAAAATTTCCATTGGCAGAGCTTTGATCATCCAGGTGATACTCTTTTACCAAGCATGAAGCTAGGCAAGAACTTTGTAACCGGCCAAGAGACGTATCTTTCATCATGGAAGAGCTATGATGACCCGTCCTCGGGTGATTATACGTATCATTTGGATCCAAATGGATATCCACAAGTTACTCTTTTGAAAGATTCGGCTGAGATTTTCCGTACTGGATCATGGAATGGGATTGGATTCAGTGGGACCCCATCGTTAAGATCAAATTCCATTTACGAGTACACATTGGTATTCAACAAGGAGGAGGTTTACTATTGTTACGACCTTGTCAATACCTCGACTTTATCAAGGTTTGTTTTGAGCCCCGATGGAGCCGCACAGCGCTGGATATGGGTTGACAGAGTACAAAATTGGTTTCTCTATTACACTTCTCCGATAGATAACTGTGATACTTATTCCCTGTGTGGTGGTTATGGTAGTTGTAACATTGGGAACTCCCCTGTTTGCGGGTGTTTGGATAAATTTGTGCCTAAATATCCCGAGGATTGGGCAAGAACGGATTGGTCAAAAGGGTGCGTTAGAAGGATACCTTTGGATTGTGAAAACGGAGACGGGTTTTTGATGTATTCTGGGATTAAATTGCCAGACACGCGGAATTCTTGGTTTAATAAGAGCATGAACCTAAAGGAGTGTGAGATTGTGTGCTTGAAGAACTGCAAGTGTACGGCTTATGCAGGTTTAGATATAAGACAAGGGGGAAGGGGGTGTTTGCTTTGGTTTGGTGATCTGATTGACATTAGATTTTTCTCTGAAGGTGGTCAAGATATCTATGTGAGAATGGCTGCCTCTGATCTAGCCCCCCAAGTTGGTTCCAATAGGAAGAAAATGGAAATAATTAAATGGCTATATGTCTCCGAATATGCAGTAGATGGCCTTTTCTCAGTAAAATCGGATGTATATAGCTTCGGAGTTTTGGTGCTAGAGATTGTGAGTGGGAAGAGAAACAGAGGATTCGTTAACAAAGAACATCACCATAATCTTCTTGGACATGCGTGGAAGCTCCATTTAGAAGACAGGTCTACAGAATTGATGGACAAGAATGTAGTCGAATCATGTCATCTATCTCAAGTGCTACGAGCAATTCACGTGGGACTATTATGTGTGCAACAATATCCCGAAGATAGGCCGAGCATGTCAGCTGTGGTTCGGATGTTGAGTAGTGAGAATGCATTGGCAGTGCCTAAACAGCCTGGTTTTTATACTGAAAGGACTATACTTGAGGTTGGAGGTTCTTCCAGTTCTCACACAGCAAGTTCAGTAAATGAAATCACCATTACGCTATTACATGCTCGATAGAAACACGTGTAAATACAATAGGTTGATTTGTATGCCTATGTTTATACATGTAAAAGCATAATTTCTCTCTCTGTTAATGGACATTTATCTTGGGAAAATTCCCTAACAAGATCAGTTTAAATAGAATTAATGTTGCGCATTGGTATCTAGTTCACATTGATTTGGTCGAGTCTTTATCCAGCATTATATTCCATACTGATT

Network for GWHGAAZE002766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	78	185	9.80E-36
PF00954.21	S_locus_glycop	217	325	2.60E-28
PF08276.12	PAN_2	347	413	6.70E-22
PF07714.18	PK_Tyr_Ser-Thr	439	552	2.50E-07
PF11883.9	DUF3403	555	598	3.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048544	biological_process	recognition of pollen
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.452
	SRR3591706	second leaf	0.201
	SRR3591707	mature leaf	1.685
	SRR3591708	Shoot apex	0.091
	SRR3591709	Stem	3.298
	SRR3591710	White floral bud	1.661
	SRR3591711	White flower	4.504
	SRR3591712	Green floral bud	0.388
	SRR3591713	Yellow flower	6.713
SRP173429	SRR8316895	Juvenile bud stage	1.341
	SRR8316896	Juvenile bud stage	2.137
	SRR8316897	Juvenile bud stage	0.599
	SRR8316894	Third green stage	1.040
	SRR8316900	Third green stage	3.427
	SRR8316901	Third green stage	4.680
	SRR8316898	Complete white stage	1.515
	SRR8316899	Complete white stage	4.959
	SRR8316903	Complete white stage	2.312
	SRR8316902	Silver flowering stage	5.061
	SRR8316904	Silver flowering stage	5.621
	SRR8316905	Silver flowering stage	2.545
	SRR8316906	Gold flowering stage	14.829
	SRR8316907	Gold flowering stage	11.988
	SRR8316908	Gold flowering stage	11.730
SRP132670	SRR6706286	Control	3.943
	SRR6706287	Light intensity 50%	4.206
	SRR6706288	Light intensity 20%	4.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.183
	CNS0095593	Slightly white alabastrum(diploid) 2	2.665
	CNS0095594	Slightly white alabastrum(diploid) 3	2.664
	CNS0095595	Whole white alabastrum(diploid) 2	2.172
	CNS0095596	Whole white alabastrum(diploid) 3	0.769
	CNS0095597	Whole white alabastrum(diploid) 4	2.175
	CNS0095598	Silvery flower (diploied) 1	5.682
	CNS0095599	Silvery flower (diploied) 2	2.085
	CNS0095600	Silvery flower (diploied) 3	4.918
	CNS0095601	Golden flower (diploid) 1	4.531
	CNS0095602	Golden flower (diploid) 2	4.643
	CNS0095603	Golden flower (diploid) 3	3.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.184
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.194
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	6.737
	CNS0095611	Silvery flower (tetraploid) 2	4.891
	CNS0095612	Silvery flower (tetraploid) 3	12.995
	CNS0095613	Golden flower (tetraploid) 1	2.945
	CNS0095614	Golden flower (tetraploid) 2	4.540
	CNS0095615	Golden flower (tetraploid) 3	3.395
CRA001975	CRR073297	Stem 1	1.068
	CRR073298	Stem 2	0.645
	CRR073299	Stem 3	0.224
	CRR073300	Leaf 1	1.899
	CRR073301	Leaf 2	1.232
	CRR073302	Leaf 3	1.468
	CRR073303	Juvenile bud 1	0.925
	CRR073304	Juvenile bud 2	1.293
	CRR073305	Juvenile bud 3	1.709
	CRR073306	Third green 1	5.150
	CRR073307	Third green 2	3.523
	CRR073308	Third green 3	4.378
	CRR073309	Second white 1	4.614
	CRR073310	Second white 2	4.105
	CRR073311	Second white 3	7.286
	CRR073312	Silver flowering 1	4.192
	CRR073313	Silver flowering 2	3.351
	CRR073314	Silver flowering 3	3.516
	CRR073315	Gold flowering 1	4.077
	CRR073316	Gold flowering 2	3.738
	CRR073317	Gold flowering 3	2.397
	CRR073318	Tawny withering 1	3.322
	CRR073319	Tawny withering 2	5.275
	CRR073320	Tawny withering 3	2.813