Gene detail

Detail information of GWHGAAZE002735

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003634688.1	0	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Vitis vinifera]
Swissprot	tr\|Q9FL69\|AGD5_ARATH	2E-162	Probable ADP-ribosylation factor GTPase-activating protein AGD5
trEMBL	tr\|E0CSS0\|E0CSS0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20369.3}
TAIR10	AT5G54310.1	1E-116	ARF-GAP domain 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	85243538	85249876	+
GWHAAZE00000001	mRNA	85243538	85249876	+
GWHAAZE00000001	exon	85243538	85243588	+
GWHAAZE00000001	exon	85244287	85244432	+
GWHAAZE00000001	exon	85244609	85244699	+
GWHAAZE00000001	exon	85245233	85245287	+
GWHAAZE00000001	exon	85245402	85245492	+
GWHAAZE00000001	exon	85245601	85245835	+
GWHAAZE00000001	exon	85246635	85246827	+
GWHAAZE00000001	exon	85246990	85247249	+
GWHAAZE00000001	exon	85247856	85248110	+
GWHAAZE00000001	exon	85248188	85248246	+
GWHAAZE00000001	exon	85249717	85249876	+
GWHAAZE00000001	CDS	85243538	85243588	+
GWHAAZE00000001	CDS	85244287	85244432	+
GWHAAZE00000001	CDS	85244609	85244699	+
GWHAAZE00000001	CDS	85245233	85245287	+
GWHAAZE00000001	CDS	85245402	85245492	+
GWHAAZE00000001	CDS	85245601	85245835	+
GWHAAZE00000001	CDS	85246635	85246827	+
GWHAAZE00000001	CDS	85246990	85247249	+
GWHAAZE00000001	CDS	85247856	85248110	+
GWHAAZE00000001	CDS	85248188	85248246	+
GWHAAZE00000001	CDS	85249717	85249876	+

Transcript Sequence
>GWHTAAZE002739 ATGAACCAGAAGGCCAACGTCTCCAAAGAACTCAATGCCAAACACAGAAAGGATCCTCCTGCTGAACAATTTCATAGTTGGCATCCTATCTTCCTGTCACACACACTAGTTGATCTATTAATGCTTTGCTGGTTTCAGATACTGGAAGGGCTTCTTAAATTGCCAGAGAACAGGGAGTGTGCTGACTGCAAAGCTAAAGGTCCTCGATGGGCTAGTGTAAATCTAGGCATCTTTATCTGCATGCAGTGTTCTGGAATCCACAGAAGCCTTGGGGTTCACATATCAAAAGTGAGGTCTGCTACTCTGGACACATGGCTTCCTGAGCAAGTTGCCTTTATTCAATCAATGGGAAATGAGAAGTCAAATAGTTACTGGGAAGCAGAGCTACCACCGAATTACGACAGAGTTGGGATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCTAAGGATGGAAAACCAAAGTCTCCAACGAGGGTCCATGAAGAGAAAGCCTCTGTACAGTGGCATGGACGGGGGGATAGAAGTGGACATAGGTATGCGAGTACCTCTGAAAACTTATCCAATGAAAGGAAGAGCTTTCAGGCACCTGCTACCAAGGATAGCATTTCCGCTACAAGAATTAGTATTCCTGTGCCTCCAAAAGGACCTGAACCTGTCACTCCTGCACCAAAGCCTCAACAGGTGGTAGAGAAATCGGAGAAAGCACTTCCCCCGGCTGTACGAACTGCATCTCCTCCCAAAGTTGATTATGCTACTGATCTTTTCAACATGCTATCTATGGATGGTCCTGCTGAAAATGGCTCGGGGGCAGCTTCTTCCGACGATACTGCATGGGCAGGTTTTCAATCTGCTGAAGAAGCATCAACTTCTGAAAAAACTGGAGCCAATAAACCTGATGTTAACAAAACCCAGCCTACGTCTGAAGTTGAAGATTTATTCAAAGATTCATCTCCAGTTTCAACTGCTGAAAAATCTGACCCTACAAAACCCATTGACAATAAAGTCCAGCCCAATTCTGGAATTGACGATTTATTTAAAGATTCAACTCTGCTCTCACAGAATCCCCAAAAAGATGTTAAAACTGATATTATGAGCCTTTTTGAGAAGTCAAATATGACATCACCATTTTCAATGCATCAACAGCAACTTGCTATGCTGGCTCACCAACAGTCTCTTCTTATCGCGGCTGCAGCAGCTCAATCTGGTGGCAATGTGCCAAAATTTCCTGTCAATGCACAACAGCCTGCTTCCAATGGTGGTACCAATTTAAACTCTCAAAACTGGCCAAATGTTGGCTACCAATTTCCTGGGATGGTGACACCGGCTGCTGGAAAGACTGAGATAGAGAAGTATATGCAACAGATGGGAAACATGGGAACAACAAATCCAGTTGGGAATTCGGTTCCCTTTCCAACATCCAGTTTTAACACGATGAGCCAGAATGCTCCCGTCAATGGTTTTACACCCTCCGGAGCGATAAAACCGCAATCAGCATCCCAGGTGTCATCTACATCACCTGCGCAGACAGGTAACGACTATGACTTCTCCTCATTAACAAAGGGCCTATTCTCAAAGCCATGA

Network for GWHGAAZE002735

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	47	154	3.30E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12486	SMAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016810	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.185
	SRR3591706	second leaf	15.473
	SRR3591707	mature leaf	14.827
	SRR3591708	Shoot apex	22.675
	SRR3591709	Stem	24.840
	SRR3591710	White floral bud	45.872
	SRR3591711	White flower	41.359
	SRR3591712	Green floral bud	44.014
	SRR3591713	Yellow flower	49.146
SRP173429	SRR8316895	Juvenile bud stage	14.701
	SRR8316896	Juvenile bud stage	23.148
	SRR8316897	Juvenile bud stage	12.194
	SRR8316894	Third green stage	9.633
	SRR8316900	Third green stage	32.240
	SRR8316901	Third green stage	28.924
	SRR8316898	Complete white stage	13.400
	SRR8316899	Complete white stage	27.302
	SRR8316903	Complete white stage	24.101
	SRR8316902	Silver flowering stage	17.629
	SRR8316904	Silver flowering stage	24.295
	SRR8316905	Silver flowering stage	10.699
	SRR8316906	Gold flowering stage	42.657
	SRR8316907	Gold flowering stage	38.329
	SRR8316908	Gold flowering stage	39.227
SRP132670	SRR6706286	Control	28.875
	SRR6706287	Light intensity 50%	28.133
	SRR6706288	Light intensity 20%	27.984
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.709
	CNS0095593	Slightly white alabastrum(diploid) 2	18.929
	CNS0095594	Slightly white alabastrum(diploid) 3	18.384
	CNS0095595	Whole white alabastrum(diploid) 2	33.805
	CNS0095596	Whole white alabastrum(diploid) 3	35.704
	CNS0095597	Whole white alabastrum(diploid) 4	46.563
	CNS0095598	Silvery flower (diploied) 1	19.689
	CNS0095599	Silvery flower (diploied) 2	15.009
	CNS0095600	Silvery flower (diploied) 3	35.745
	CNS0095601	Golden flower (diploid) 1	18.886
	CNS0095602	Golden flower (diploid) 2	42.556
	CNS0095603	Golden flower (diploid) 3	37.829
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.544
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	67.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.221
	CNS0095610	Silvery flower (tetraploid) 1	30.679
	CNS0095611	Silvery flower (tetraploid) 2	28.734
	CNS0095612	Silvery flower (tetraploid) 3	31.527
	CNS0095613	Golden flower (tetraploid) 1	21.503
	CNS0095614	Golden flower (tetraploid) 2	32.679
	CNS0095615	Golden flower (tetraploid) 3	48.970
CRA001975	CRR073297	Stem 1	30.487
	CRR073298	Stem 2	28.092
	CRR073299	Stem 3	29.392
	CRR073300	Leaf 1	41.971
	CRR073301	Leaf 2	33.534
	CRR073302	Leaf 3	26.151
	CRR073303	Juvenile bud 1	37.937
	CRR073304	Juvenile bud 2	29.961
	CRR073305	Juvenile bud 3	35.540
	CRR073306	Third green 1	30.362
	CRR073307	Third green 2	20.780
	CRR073308	Third green 3	26.891
	CRR073309	Second white 1	33.398
	CRR073310	Second white 2	31.534
	CRR073311	Second white 3	33.297
	CRR073312	Silver flowering 1	49.658
	CRR073313	Silver flowering 2	59.803
	CRR073314	Silver flowering 3	47.788
	CRR073315	Gold flowering 1	19.280
	CRR073316	Gold flowering 2	27.583
	CRR073317	Gold flowering 3	21.673
	CRR073318	Tawny withering 1	30.270
	CRR073319	Tawny withering 2	32.203
	CRR073320	Tawny withering 3	29.084