Detail information of GWHGAAZE002725


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010268765.10PREDICTED: uncharacterized protein LOC104605628 [Nelumbo nucifera]
trEMBLtr|W9QQ45|W9QQ45_9ROSA0Peroxisomal membrane protein 2 {ECO:0000313|EMBL:EXB50359.1}
TAIR10AT1G52870.27E-133Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8500265285005911-
GWHAAZE00000001mRNA8500265285005911-
GWHAAZE00000001exon8500265285002736-
GWHAAZE00000001exon8500287485002989-
GWHAAZE00000001exon8500327085003443-
GWHAAZE00000001exon8500354585003658-
GWHAAZE00000001exon8500376085003900-
GWHAAZE00000001exon8500541485005911-
GWHAAZE00000001CDS8500541485005911-
GWHAAZE00000001CDS8500376085003900-
GWHAAZE00000001CDS8500354585003658-
GWHAAZE00000001CDS8500327085003443-
GWHAAZE00000001CDS8500287485002989-
GWHAAZE00000001CDS8500265285002736-
Transcript Sequence

Network for GWHGAAZE002725

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04117.13Mpv17_PMP222863471.70E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13348MPV17 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf89.637
SRR3591706second leaf228.242
SRR3591707mature leaf636.969
SRR3591708Shoot apex80.351
SRR3591709Stem124.138
SRR3591710White floral bud129.640
SRR3591711White flower148.515
SRR3591712Green floral bud74.172
SRR3591713Yellow flower211.980
SRP173429 SRR8316895Juvenile bud stage 67.009
SRR8316896Juvenile bud stage 93.451
SRR8316897Juvenile bud stage 55.863
SRR8316894Third green stage 37.322
SRR8316900Third green stage 121.155
SRR8316901Third green stage 108.343
SRR8316898Complete white stage 65.248
SRR8316899Complete white stage 163.900
SRR8316903Complete white stage 104.620
SRR8316902Silver flowering stage83.284
SRR8316904Silver flowering stage109.947
SRR8316905Silver flowering stage64.251
SRR8316906Gold flowering stage 200.762
SRR8316907Gold flowering stage 159.679
SRR8316908Gold flowering stage 196.045
SRP132670SRR6706286Control117.730
SRR6706287Light intensity 50%121.388
SRR6706288Light intensity 20%136.835
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.085
CNS0095593Slightly white alabastrum(diploid) 254.804
CNS0095594Slightly white alabastrum(diploid) 351.369
CNS0095595Whole white alabastrum(diploid) 264.527
CNS0095596Whole white alabastrum(diploid) 360.641
CNS0095597Whole white alabastrum(diploid) 459.850
CNS0095598Silvery flower (diploied) 189.906
CNS0095599Silvery flower (diploied) 297.841
CNS0095600Silvery flower (diploied) 3215.320
CNS0095601Golden flower (diploid) 1130.669
CNS0095602Golden flower (diploid) 2205.110
CNS0095603Golden flower (diploid) 3200.400
CNS0095604Slightly white alabastrum(tetraploid) 168.194
CNS0095605Slightly white alabastrum(tetraploid) 258.721
CNS0095606Slightly white alabastrum(tetraploid) 397.666
CNS0095607Whole white alabastrum(tetraploid) 151.511
CNS0095608Whole white alabastrum(tetraploid) 259.671
CNS0095609Whole white alabastrum(tetraploid) 3121.279
CNS0095610Silvery flower (tetraploid) 1245.076
CNS0095611Silvery flower (tetraploid) 2313.773
CNS0095612Silvery flower (tetraploid) 3186.004
CNS0095613Golden flower (tetraploid) 1189.728
CNS0095614Golden flower (tetraploid) 2256.552
CNS0095615Golden flower (tetraploid) 3317.421
CRA001975CRR073297Stem 189.136
CRR073298Stem 281.922
CRR073299Stem 381.346
CRR073300Leaf 1111.134
CRR073301Leaf 2104.372
CRR073302Leaf 3119.321
CRR073303Juvenile bud 1129.965
CRR073304Juvenile bud 2126.930
CRR073305Juvenile bud 3121.691
CRR073306Third green 1210.752
CRR073307Third green 2166.396
CRR073308Third green 3165.122
CRR073309Second white 1153.368
CRR073310Second white 2147.613
CRR073311Second white 3141.595
CRR073312Silver flowering 1128.288
CRR073313Silver flowering 2103.481
CRR073314Silver flowering 387.775
CRR073315Gold flowering 1346.675
CRR073316Gold flowering 2455.110
CRR073317Gold flowering 3282.233
CRR073318Tawny withering 151.170
CRR073319Tawny withering 251.256
CRR073320Tawny withering 341.728