Gene detail

Detail information of GWHGAAZE002724

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007021328.1	1.6462E-152	NAC domain class transcription factor isoform 1 [Theobroma cacao]
Swissprot	tr\|Q93VY3\|NAC72_ARATH	2E-127	NAC domain-containing protein 72
trEMBL	tr\|A0A061F7J6\|A0A061F7J6_THECC	6E-153	NAC domain class transcription factor isoform 1 {ECO:0000313\|EMBL:EOY12853.1}
TAIR10	AT4G27410.2	6E-102	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84996028	84997434	+
GWHAAZE00000001	mRNA	84996028	84997434	+
GWHAAZE00000001	exon	84996028	84996270	+
GWHAAZE00000001	exon	84996471	84996739	+
GWHAAZE00000001	exon	84996856	84997223	+
GWHAAZE00000001	exon	84997299	84997434	+
GWHAAZE00000001	five_prime_UTR	84996028	84996089	+
GWHAAZE00000001	CDS	84996090	84996270	+
GWHAAZE00000001	CDS	84996471	84996739	+
GWHAAZE00000001	CDS	84996856	84997223	+
GWHAAZE00000001	CDS	84997299	84997434	+

Transcript Sequence
>GWHTAAZE002728 ATTAACAATAAATTTTAACAAAATTCGAATTTCCTCTCGAGTAGTCTAATAGTTTCCGAATCATGGGTGTGCCGGAAACTGACCCTCTTTCTCAGCTTAGCTTACCGCCTGGATTCCGATTTTATCCGACGGACGAGGAGCTTCTTGTTCAGTATTTGTGCCGGAAAGTAGCCGGACATCATTTCTCTATGCAGATTATCGGAGAGATTGATTTGTATAAATTCGATCCATGGGTTTTACCTGGTAAAGCAATATTTGGAGAGAAAGAATGGTACTTCTTTAGTCCTAGAGATCGAAAGTATCCGAATGGTTCCCGGCCCAACAGAGTTGCCGGGTCGGGTTATTGGAAGGCAACAGGAACTGATAAGATCATAACGAAAGACGGAGTAAAAGTGGGTATCAAGAAAGCTCTTGTGTTTTACATAGGGAAAGCTCCAAAGGGAACAAAGACAAATTGGATTATGCACGAGTACAGACTTTCAGATCCTCAGAGAAATAGTAGAAGCACAAAGTTGGATGAATGGGTGCTATGCCGAATTTACAAGAAGAATTCGAGCGCACAAAAGCCTGAAATGGCCATGGGTGCTCCTCCGACCAAAGAATACAGCCACGGTTCATCATCTTCATCTTCGTCTCAGTTCGACGATGTTATGGAATCCTTGCCGGAGATCGATGACCGGTCTTTCGCTTTGCCACGAATGAACTCTCTCAAAACGTTTCAACAAGACGACAAGCAGAGTCTTCAGAATCTCGCCCGACTTGGTTCCGCCAACTTTGACTGGGCGAGTCTCGCCGGATTCGGATCCCTGCCTGAGCTAGTCCCCGGCGTTCAGGCACAGTCCCAATCTCAGGCGCCGGTGAATAATAGTAACGGTGACATAAATCAGCGGGTTGATAATTCGGGTACCGGGTTGTTTCAACAGAATCCGAATGGGTACTCTCAAAGTTTCTCGAACTCGATTGACCCGTTTGGGATTGGATACCCGATCCAGCAGAACTTGGGATTCAAACAGTGA

Network for GWHGAAZE002724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	15	139	2.30E-36

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.578
	SRR3591706	second leaf	4.092
	SRR3591707	mature leaf	10.302
	SRR3591708	Shoot apex	13.987
	SRR3591709	Stem	36.443
	SRR3591710	White floral bud	406.961
	SRR3591711	White flower	1097.755
	SRR3591712	Green floral bud	82.700
	SRR3591713	Yellow flower	1783.752
SRP173429	SRR8316895	Juvenile bud stage	31.624
	SRR8316896	Juvenile bud stage	12.049
	SRR8316897	Juvenile bud stage	40.926
	SRR8316894	Third green stage	3.514
	SRR8316900	Third green stage	14.679
	SRR8316901	Third green stage	18.926
	SRR8316898	Complete white stage	155.158
	SRR8316899	Complete white stage	144.487
	SRR8316903	Complete white stage	228.938
	SRR8316902	Silver flowering stage	459.456
	SRR8316904	Silver flowering stage	542.221
	SRR8316905	Silver flowering stage	303.600
	SRR8316906	Gold flowering stage	1344.150
	SRR8316907	Gold flowering stage	1108.041
	SRR8316908	Gold flowering stage	1262.998
SRP132670	SRR6706286	Control	32.485
	SRR6706287	Light intensity 50%	34.884
	SRR6706288	Light intensity 20%	28.950
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	118.974
	CNS0095593	Slightly white alabastrum(diploid) 2	94.453
	CNS0095594	Slightly white alabastrum(diploid) 3	145.035
	CNS0095595	Whole white alabastrum(diploid) 2	93.187
	CNS0095596	Whole white alabastrum(diploid) 3	32.944
	CNS0095597	Whole white alabastrum(diploid) 4	43.205
	CNS0095598	Silvery flower (diploied) 1	290.217
	CNS0095599	Silvery flower (diploied) 2	279.172
	CNS0095600	Silvery flower (diploied) 3	675.378
	CNS0095601	Golden flower (diploid) 1	405.885
	CNS0095602	Golden flower (diploid) 2	944.496
	CNS0095603	Golden flower (diploid) 3	910.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.005
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.706
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.267
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.783
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.320
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.768
	CNS0095610	Silvery flower (tetraploid) 1	784.507
	CNS0095611	Silvery flower (tetraploid) 2	682.091
	CNS0095612	Silvery flower (tetraploid) 3	836.473
	CNS0095613	Golden flower (tetraploid) 1	1061.497
	CNS0095614	Golden flower (tetraploid) 2	867.373
	CNS0095615	Golden flower (tetraploid) 3	1551.263
CRA001975	CRR073297	Stem 1	106.076
	CRR073298	Stem 2	92.657
	CRR073299	Stem 3	68.386
	CRR073300	Leaf 1	132.546
	CRR073301	Leaf 2	144.315
	CRR073302	Leaf 3	87.409
	CRR073303	Juvenile bud 1	135.559
	CRR073304	Juvenile bud 2	234.242
	CRR073305	Juvenile bud 3	66.770
	CRR073306	Third green 1	558.636
	CRR073307	Third green 2	431.505
	CRR073308	Third green 3	504.908
	CRR073309	Second white 1	480.607
	CRR073310	Second white 2	966.057
	CRR073311	Second white 3	975.942
	CRR073312	Silver flowering 1	1492.187
	CRR073313	Silver flowering 2	1029.220
	CRR073314	Silver flowering 3	1362.962
	CRR073315	Gold flowering 1	8.438
	CRR073316	Gold flowering 2	55.047
	CRR073317	Gold flowering 3	27.322
	CRR073318	Tawny withering 1	153.751
	CRR073319	Tawny withering 2	649.629
	CRR073320	Tawny withering 3	102.074