Gene detail

Detail information of GWHGAAZE002701

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082667.1	1.88573E-92	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Sesamum indicum]
Swissprot	tr\|Q6R567\|RMA1_CAPAN	3E-55	E3 ubiquitin-protein ligase RMA1H1
trEMBL	tr\|W9QRE2\|W9QRE2_9ROSA	3E-86	E3 ubiquitin-protein ligase {ECO:0000313\|EMBL:EXB51367.1}
TAIR10	AT4G03510.2	7E-35	RING membrane-anchor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84498773	84499525	+
GWHAAZE00000001	mRNA	84498773	84499525	+
GWHAAZE00000001	exon	84498773	84499525	+
GWHAAZE00000001	CDS	84498773	84499525	+

Transcript Sequence
>GWHTAAZE002705 ATGGCCTTGGAGCATAACTTTCAAGAACCTGCAACACACTGCCAGTCATCAGGCGAAATCTCGTTCAAACAAAACTGGAAGTCATCAGTATCATCAGCTCCGTCAATATCTTCTTCAGAAAGTACGGATGGATGCTTCGAATGTAACATATGCCTAGACTCTGTCAATGAGCCCGTGGTGACCCTTTGCGGTCACCTCTACTGTTGGCCCTGTATCTACAAATGGCTCCAACGCTCTTCCCTTGACTCCACAGATCAACCAAAATGCCCCGTTTGTAAATCCAACATATCCAACTCCTCAATGATTCCCCTATACGGGCGGGGCAACTCCCGACCCGAACCCAAGAAACCTCAACCGGAGCCGGTCATACCCCGTAGACCACCGGCTCTTGGCTTAAACGCACTCCTATCAATGGCTTCGAATGCAAATCCACAACTTCACTCCAACCACTTTCAGCCACAGTCATTTCACCAACATCAATACTTGGCCCACCCTTTAGGCACTCATGTGCCAGCGGGCCCGTTATCGAGCTATTTTAGCCCAACGGTGGGGATGTTCGGTGAGATGGTGTTCGCAAGGTGGTTTGGGAGCTCAGAAAATTTATTTTCTTATCCGAATTCTTATGACCCTCTGGTGGGGACTAGTGGGAGTAGCCCTAGGGTAAGAAGACAGGAATTGGAGGTGGACAAGTCCCTAAACAGAATGTCCATTTTCCTTCTCTGCTGCTTTATTTTGTGCCTTCTCTTGTTCTGA

Network for GWHGAAZE002701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13445.7	zf-RING_UBOX	48	90	2.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10666	RNF5	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	238.156
	SRR3591706	second leaf	17.716
	SRR3591707	mature leaf	8.954
	SRR3591708	Shoot apex	269.795
	SRR3591709	Stem	80.992
	SRR3591710	White floral bud	63.063
	SRR3591711	White flower	50.786
	SRR3591712	Green floral bud	27.827
	SRR3591713	Yellow flower	163.707
SRP173429	SRR8316895	Juvenile bud stage	46.598
	SRR8316896	Juvenile bud stage	102.749
	SRR8316897	Juvenile bud stage	36.492
	SRR8316894	Third green stage	22.961
	SRR8316900	Third green stage	44.712
	SRR8316901	Third green stage	45.702
	SRR8316898	Complete white stage	25.147
	SRR8316899	Complete white stage	53.779
	SRR8316903	Complete white stage	44.557
	SRR8316902	Silver flowering stage	19.129
	SRR8316904	Silver flowering stage	22.150
	SRR8316905	Silver flowering stage	23.721
	SRR8316906	Gold flowering stage	119.334
	SRR8316907	Gold flowering stage	79.130
	SRR8316908	Gold flowering stage	59.953
SRP132670	SRR6706286	Control	48.839
	SRR6706287	Light intensity 50%	20.043
	SRR6706288	Light intensity 20%	16.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	123.135
	CNS0095593	Slightly white alabastrum(diploid) 2	97.565
	CNS0095594	Slightly white alabastrum(diploid) 3	63.706
	CNS0095595	Whole white alabastrum(diploid) 2	52.298
	CNS0095596	Whole white alabastrum(diploid) 3	59.704
	CNS0095597	Whole white alabastrum(diploid) 4	39.906
	CNS0095598	Silvery flower (diploied) 1	76.652
	CNS0095599	Silvery flower (diploied) 2	56.058
	CNS0095600	Silvery flower (diploied) 3	117.576
	CNS0095601	Golden flower (diploid) 1	130.989
	CNS0095602	Golden flower (diploid) 2	201.294
	CNS0095603	Golden flower (diploid) 3	185.061
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.060
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.680
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.523
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.749
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.723
	CNS0095610	Silvery flower (tetraploid) 1	71.878
	CNS0095611	Silvery flower (tetraploid) 2	158.157
	CNS0095612	Silvery flower (tetraploid) 3	31.157
	CNS0095613	Golden flower (tetraploid) 1	56.345
	CNS0095614	Golden flower (tetraploid) 2	104.058
	CNS0095615	Golden flower (tetraploid) 3	299.143
CRA001975	CRR073297	Stem 1	311.740
	CRR073298	Stem 2	283.058
	CRR073299	Stem 3	296.752
	CRR073300	Leaf 1	150.009
	CRR073301	Leaf 2	258.745
	CRR073302	Leaf 3	152.352
	CRR073303	Juvenile bud 1	135.438
	CRR073304	Juvenile bud 2	66.317
	CRR073305	Juvenile bud 3	229.632
	CRR073306	Third green 1	9.435
	CRR073307	Third green 2	11.848
	CRR073308	Third green 3	11.330
	CRR073309	Second white 1	2.110
	CRR073310	Second white 2	3.750
	CRR073311	Second white 3	6.196
	CRR073312	Silver flowering 1	20.651
	CRR073313	Silver flowering 2	22.890
	CRR073314	Silver flowering 3	21.393
	CRR073315	Gold flowering 1	23.577
	CRR073316	Gold flowering 2	21.847
	CRR073317	Gold flowering 3	30.794
	CRR073318	Tawny withering 1	91.446
	CRR073319	Tawny withering 2	24.001
	CRR073320	Tawny withering 3	106.608