Gene detail

Detail information of GWHGAAZE002690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009784583.1	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Nicotiana sylvestris]
COG	YP_003371239.1	7E-24	serine/threonine protein kinase
Swissprot	tr\|F4I114\|Y1960_ARATH	0	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|M5X9K3\|M5X9K3_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15735.1}
TAIR10	AT1G53050.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	84295696	84302611	-
GWHAAZE00000001	mRNA	84295696	84302611	-
GWHAAZE00000001	exon	84295696	84296382	-
GWHAAZE00000001	exon	84296563	84297015	-
GWHAAZE00000001	exon	84297869	84297983	-
GWHAAZE00000001	exon	84298634	84298734	-
GWHAAZE00000001	exon	84299234	84299461	-
GWHAAZE00000001	exon	84299567	84299884	-
GWHAAZE00000001	exon	84300160	84300444	-
GWHAAZE00000001	exon	84301748	84302322	-
GWHAAZE00000001	exon	84302572	84302611	-
GWHAAZE00000001	five_prime_UTR	84302572	84302611	-
GWHAAZE00000001	five_prime_UTR	84302150	84302322	-
GWHAAZE00000001	CDS	84301748	84302149	-
GWHAAZE00000001	CDS	84300160	84300444	-
GWHAAZE00000001	CDS	84299567	84299884	-
GWHAAZE00000001	CDS	84299234	84299461	-
GWHAAZE00000001	CDS	84298634	84298734	-
GWHAAZE00000001	CDS	84297869	84297983	-
GWHAAZE00000001	CDS	84296563	84297015	-
GWHAAZE00000001	CDS	84296173	84296382	-
GWHAAZE00000001	three_prime_UTR	84295696	84296172	-

Transcript Sequence
>GWHTAAZE002694 TCAGTAACAGACTGCTCCACATGGGACTGTAATTTTGAAGGAAATGTATGATTTGGGTGTGTTGAATCTTGGGCTATGGTTGGTTTATTTGGTTGGATTTTGAGTGTGATGAACATGGATGAGGAGGAATTTGTGGAAATACAAGATTTTATGGGTGCCATAATTTGATTTTGGGAGGTTACTTTTAGTGGGGTTGCACTATTTTGCTGTATAATGGGGTCTGCTTGTTGTAAGCCCTCTGTCATTGAAGATAGTAAGGAGAGTCCAAAGAAGAGGTTATCATCGGATTCAAAGGTGCCCAGGGTGCCTTCTTCAAGGAGAGAAGAAGGGTCTGGAGTGAAGAATTGGTCGGCTAGTAGTGACGGGAGAGCAGTTCTGATTGATAAACAAGTGAATGTACCGATTCGGTTACCTAGTGAAAGTTTTGAGAAGAAAAGGGAGAATACCGAGCGTATTGTCTCTACGAACCATCACGGTTTGGGCAGCATTTTGCCAAAAGCTATGGAAGGGGAGCAGGTTGCAGCCGGATGGCCCTCTTGGCTGGCTGCAGTAGCTGGTGAAGCTATCTGCGGGTGGGTACCAAGAAAGGCAGACTCTTTCGAGAAGTTGGATAAAATTGGCCAGGGTACATATAGTAATGTTTATCGAGCCCGTGATCTCGATCAGGGGAAGATTGTTGCTTTGAAAAAAGTGAGATTTGATAACTTGGAGCCCGAGAGTGTTCGATTTATGGCAAGGGAAATCCACATTCTAAGAAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTGGTTACGTCTAGGATGTCCTGCAGTCTGTATCTTGTTTTTGAGTATATGGAGCATGATCTGGCAGGGCTCGCTTCCCACCCTAGTGTTAGGTTTACTGAATCACAGGTTAAATGTTACATACAACAACTTTTAGGTGGACTTGATCATTGTCACAGTCGAGGTGTTCTGCACCGTGACATTAAAGGTTCCAACCTTTTAATTGACAATAATGGCATTTTGAAGATTGCTGACTTTGGCCTGGCAAGTTTTTTCAATCCCAATCAAAGTCAGCCTCTTACAAGCCGTGTGGTGACCCTCTGGTATCGCCCACCCGAGCTTTTACTTGGTGCTACTTATTATGGTATTTCTGTGGATTTATGGAGTACTGGTTGCATACTCGCCGAGTTATATGCAGGCAAGCCTATTATGCCTGGAAGAACAGAGGTGGAGCAGTTGCATAAAATTTTCAAGCTTTGTGGGTCACCCCCTGAAGAATATTGGAGAAAATCAAAGTTGCCTCATGCTACAATTTTCAAGCCCCAACAACCTTACAGACGCTGTGTTGCAGAAACGTTTAAGGACTTCCCTGCACCTGCATTAGCACTTATGGATACCCTACTTTCCATTGATCCTGCTGATCGTGGATCTGCAGCTTCTGCTCTGAAGAACGAGTTCTTCTCGACAAATCCGCTTCCTTGTGATCCTGCAAGCTTGCCAAAGTACACTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGACGAAGAAGCTAGAAGACAAGCAGCTGCCAGAAACAAGGCCCACAAATATGATGTTGAAAGAAGAGGAACAAGAGATTCTCGAGCCATTCCAGCACCTGATGCCAATGCTGAACTAGTACTTTCAATGCAGAAAAGACAAGTTCAGTCCAGTTCCCAGAGTGAAAAGTTCAACCCTCATCATGAAGAAGCTGCTTCTGGTTTTCTGATCGACCCACCTAGACCATCATCTCAAGCTTCTGATGAAGTAAGCAATTATCAGCTTCACAAGAGAGCTTCGCATTCCGGGCCATTGACCCACCGAGGTGCCTGGTCAAAGGTTAGTAAAAACAGGGAAGACGCGATCAAGATCTCTACAGGGGCAGACTTATCGACAATGTCCGGCTTAGTAACAGCACGGAGGAGCTTGTTATCTGAAGATCGCAGGGATATATTTGGTATTTCACAACACGAAGGTCCAAAACTAGTAGGCAGGTTCCCAGGTTCCTTCAAGGAAACTTCAGATTCAACGAGGAAGCAGGATCAAAACACTCACACGCAGATTGTTACAGGTCAACCTAACAGGGACAAAAGTGGTCCGGTTATTCTCGGTTATGGGTCAAAGGACCGTAAAATTCACTACTCTGGGCCGCTGCTAGCTCCATCGGGGAAAGTGGATCAGATTCTAAAAGACCATGATCGCCAAATTCAAGAAGCTGCAAGAAGAGTGCGTTTGGGGAAGGCAAAAATGAGAAAACTTCAGGTTGAAGGGAACCCCTTATCAACCAATTCTTCATGGTTAATTTCTGGTCGTTGAGCAAACTCGAGAGGAGATCGCTTCAACAAATTCAGCTGTGATTCTCTTCATAATGAGGTACTTTGGAGTTTCATTTGTACAGGGGATCGTTCCAAGAAAAATGGGAAGGGCATTCTAACCAGTTGCCCGTTTAAGCTTCTACTCTCAACTGTGTCTGCATTCTGTCACTTTGAGCACCCGAAGTGTAATTGTTTCCACATCAAGTTTTAGTCAGTCTACCTCGATTACTCCCATTTTGTGAAGTGTATTCACTTTTTGCCCACATGTTCACAACCAGAGGAATTCTTTGAAGTGTATTATGTAGCGAGTAAATTCAAACAAACTAGCAAGTAAAACTGAGCTAGGCAAACCCTACTTACACAACTGGTGGGTTCCGCATGAATGTGCGGCATCTCACTAGTTATGCGTATTGGAAAATTTCAGAAAATTGAATAGTATATGGATTCATATGAAATTTCACATCTTCATTTCTTTTTT

Network for GWHGAAZE002690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	129	413	5.30E-68

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.094
	SRR3591706	second leaf	10.853
	SRR3591707	mature leaf	4.370
	SRR3591708	Shoot apex	36.178
	SRR3591709	Stem	18.521
	SRR3591710	White floral bud	6.369
	SRR3591711	White flower	6.917
	SRR3591712	Green floral bud	8.880
	SRR3591713	Yellow flower	0.580
SRP173429	SRR8316895	Juvenile bud stage	7.562
	SRR8316896	Juvenile bud stage	8.732
	SRR8316897	Juvenile bud stage	2.758
	SRR8316894	Third green stage	3.403
	SRR8316900	Third green stage	3.765
	SRR8316901	Third green stage	4.001
	SRR8316898	Complete white stage	0.088
	SRR8316899	Complete white stage	3.766
	SRR8316903	Complete white stage	1.498
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.118
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.030
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.326
	SRR6706287	Light intensity 50%	3.845
	SRR6706288	Light intensity 20%	4.087
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.926
	CNS0095593	Slightly white alabastrum(diploid) 2	9.278
	CNS0095594	Slightly white alabastrum(diploid) 3	9.403
	CNS0095595	Whole white alabastrum(diploid) 2	4.418
	CNS0095596	Whole white alabastrum(diploid) 3	2.850
	CNS0095597	Whole white alabastrum(diploid) 4	3.000
	CNS0095598	Silvery flower (diploied) 1	10.990
	CNS0095599	Silvery flower (diploied) 2	7.656
	CNS0095600	Silvery flower (diploied) 3	2.251
	CNS0095601	Golden flower (diploid) 1	5.410
	CNS0095602	Golden flower (diploid) 2	3.731
	CNS0095603	Golden flower (diploid) 3	3.521
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.093
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.891
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.991
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.761
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.009
	CNS0095610	Silvery flower (tetraploid) 1	1.035
	CNS0095611	Silvery flower (tetraploid) 2	2.037
	CNS0095612	Silvery flower (tetraploid) 3	0.941
	CNS0095613	Golden flower (tetraploid) 1	0.002
	CNS0095614	Golden flower (tetraploid) 2	0.455
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	14.691
	CRR073298	Stem 2	12.953
	CRR073299	Stem 3	11.950
	CRR073300	Leaf 1	7.433
	CRR073301	Leaf 2	5.340
	CRR073302	Leaf 3	5.641
	CRR073303	Juvenile bud 1	2.447
	CRR073304	Juvenile bud 2	2.678
	CRR073305	Juvenile bud 3	2.385
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.096
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.028
	CRR073315	Gold flowering 1	0.380
	CRR073316	Gold flowering 2	0.635
	CRR073317	Gold flowering 3	0.452
	CRR073318	Tawny withering 1	10.509
	CRR073319	Tawny withering 2	7.292
	CRR073320	Tawny withering 3	11.424