Detail information of GWHGAAZE002678


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285125.10PREDICTED: serine/threonine-protein kinase cst-1 isoform X1 [Vitis vinifera]
COGYP_004491291.11E-23serine/threonine-protein kinase PknB
Swissprottr|O23304|BLUS1_ARATH1E-41Serine/threonine-protein kinase BLUS1
trEMBLtr|E0CSG9|E0CSG9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI20268.3}
TAIR10AT3G15220.10Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8402890484040119-
GWHAAZE00000001mRNA8402890484040119-
GWHAAZE00000001exon8404009184040119-
GWHAAZE00000001exon8403962084039647-
GWHAAZE00000001exon8403940984039531-
GWHAAZE00000001exon8403849284038603-
GWHAAZE00000001exon8403807084038107-
GWHAAZE00000001exon8403790884037961-
GWHAAZE00000001exon8403731884037386-
GWHAAZE00000001exon8403703684037152-
GWHAAZE00000001exon8403680284036870-
GWHAAZE00000001exon8403545384035494-
GWHAAZE00000001exon8403456584034644-
GWHAAZE00000001exon8403349484033629-
GWHAAZE00000001exon8403311484033428-
GWHAAZE00000001exon8403164684031732-
GWHAAZE00000001exon8403135384031520-
GWHAAZE00000001exon8403088484031014-
GWHAAZE00000001exon8403063884030776-
GWHAAZE00000001exon8402980584029926-
GWHAAZE00000001exon8402934284029524-
GWHAAZE00000001exon8402890484029222-
GWHAAZE00000001five_prime_UTR8404009184040119-
GWHAAZE00000001five_prime_UTR8403962084039647-
GWHAAZE00000001five_prime_UTR8403944584039531-
GWHAAZE00000001CDS8403940984039444-
GWHAAZE00000001CDS8403849284038603-
GWHAAZE00000001CDS8403807084038107-
GWHAAZE00000001CDS8403790884037961-
GWHAAZE00000001CDS8403731884037386-
GWHAAZE00000001CDS8403703684037152-
GWHAAZE00000001CDS8403680284036870-
GWHAAZE00000001CDS8403545384035494-
GWHAAZE00000001CDS8403456584034644-
GWHAAZE00000001CDS8403349484033629-
GWHAAZE00000001CDS8403311484033428-
GWHAAZE00000001CDS8403164684031732-
GWHAAZE00000001CDS8403135384031520-
GWHAAZE00000001CDS8403088484031014-
GWHAAZE00000001CDS8403063884030776-
GWHAAZE00000001CDS8402980584029926-
GWHAAZE00000001CDS8402934284029524-
GWHAAZE00000001CDS8402918384029222-
GWHAAZE00000001three_prime_UTR8402890484029182-
Transcript Sequence

Network for GWHGAAZE002678

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase11658.70E-42
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilySTE_STE20-YSK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.142
SRR3591706second leaf12.399
SRR3591707mature leaf7.953
SRR3591708Shoot apex21.536
SRR3591709Stem64.201
SRR3591710White floral bud14.963
SRR3591711White flower15.654
SRR3591712Green floral bud12.650
SRR3591713Yellow flower18.955
SRP173429 SRR8316895Juvenile bud stage 13.995
SRR8316896Juvenile bud stage 18.266
SRR8316897Juvenile bud stage 8.884
SRR8316894Third green stage 7.673
SRR8316900Third green stage 19.008
SRR8316901Third green stage 16.797
SRR8316898Complete white stage 9.120
SRR8316899Complete white stage 24.937
SRR8316903Complete white stage 13.207
SRR8316902Silver flowering stage8.122
SRR8316904Silver flowering stage11.827
SRR8316905Silver flowering stage5.445
SRR8316906Gold flowering stage 16.939
SRR8316907Gold flowering stage 16.252
SRR8316908Gold flowering stage 19.225
SRP132670SRR6706286Control10.566
SRR6706287Light intensity 50%10.342
SRR6706288Light intensity 20%11.513
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.936
CNS0095593Slightly white alabastrum(diploid) 214.057
CNS0095594Slightly white alabastrum(diploid) 311.755
CNS0095595Whole white alabastrum(diploid) 210.458
CNS0095596Whole white alabastrum(diploid) 39.941
CNS0095597Whole white alabastrum(diploid) 411.166
CNS0095598Silvery flower (diploied) 115.072
CNS0095599Silvery flower (diploied) 212.762
CNS0095600Silvery flower (diploied) 316.697
CNS0095601Golden flower (diploid) 113.983
CNS0095602Golden flower (diploid) 216.715
CNS0095603Golden flower (diploid) 314.677
CNS0095604Slightly white alabastrum(tetraploid) 113.471
CNS0095605Slightly white alabastrum(tetraploid) 211.582
CNS0095606Slightly white alabastrum(tetraploid) 320.662
CNS0095607Whole white alabastrum(tetraploid) 17.694
CNS0095608Whole white alabastrum(tetraploid) 26.574
CNS0095609Whole white alabastrum(tetraploid) 314.567
CNS0095610Silvery flower (tetraploid) 119.156
CNS0095611Silvery flower (tetraploid) 219.089
CNS0095612Silvery flower (tetraploid) 312.439
CNS0095613Golden flower (tetraploid) 110.321
CNS0095614Golden flower (tetraploid) 216.777
CNS0095615Golden flower (tetraploid) 310.508
CRA001975CRR073297Stem 117.485
CRR073298Stem 214.473
CRR073299Stem 39.119
CRR073300Leaf 115.569
CRR073301Leaf 215.428
CRR073302Leaf 310.655
CRR073303Juvenile bud 110.020
CRR073304Juvenile bud 27.481
CRR073305Juvenile bud 311.947
CRR073306Third green 12.665
CRR073307Third green 23.036
CRR073308Third green 33.172
CRR073309Second white 12.362
CRR073310Second white 23.236
CRR073311Second white 34.317
CRR073312Silver flowering 11.730
CRR073313Silver flowering 22.355
CRR073314Silver flowering 31.371
CRR073315Gold flowering 15.083
CRR073316Gold flowering 29.324
CRR073317Gold flowering 31.655
CRR073318Tawny withering 114.493
CRR073319Tawny withering 215.331
CRR073320Tawny withering 318.402