Gene detail

Detail information of GWHGAAZE002647

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010279077.1	0	PREDICTED: malate dehydrogenase, mitochondrial-like [Nelumbo nucifera]
COG	YP_002153084.1	3E-111	malate dehydrogenase
Swissprot	tr\|Q9ZP06\|MDHM1_ARATH	0	Malate dehydrogenase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A068UBP7\|A0A068UBP7_COFCA	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}
TAIR10	AT1G53240.1	4E-158	Lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83370748	83376061	+
GWHAAZE00000001	mRNA	83370748	83376061	+
GWHAAZE00000001	exon	83370748	83371002	+
GWHAAZE00000001	exon	83373627	83373800	+
GWHAAZE00000001	exon	83373923	83374091	+
GWHAAZE00000001	exon	83374205	83374266	+
GWHAAZE00000001	exon	83374361	83374485	+
GWHAAZE00000001	exon	83375336	83375453	+
GWHAAZE00000001	exon	83375921	83376061	+
GWHAAZE00000001	CDS	83370748	83371002	+
GWHAAZE00000001	CDS	83373627	83373800	+
GWHAAZE00000001	CDS	83373923	83374091	+
GWHAAZE00000001	CDS	83374205	83374266	+
GWHAAZE00000001	CDS	83374361	83374485	+
GWHAAZE00000001	CDS	83375336	83375453	+
GWHAAZE00000001	CDS	83375921	83376061	+

Transcript Sequence
>GWHTAAZE002651 ATGAAGGTAGCAATGTTGAGATCCATCCTCAGAAGATCCTCCTCATCATCATCTCCCTTCCTCCTACGCCGTGCTTACTCATCGGAGTCAGCTCCGGAGCGTAAAGTCGCCGTCTTGGGTGCCGCCGGAGGTATTGGACAGCCACTTGCCCTTCTCATGAAGCTAAACCCTCTAGTCTCCAGCCTCTCTCTCTACGATATCGCCGGTACCCCCGGTGTCGCCGCTGACGTCAGCCACATCAATACCAGATCTCAGGTGGCTGGGTACATGGGAGAAGATCAGCTAGGGCAGGCACTGGAGGGATGTGACCTCGTCATCATTCCCGCTGGTGTGCCAAGGAAGCCTGGTATGACTCGTGATGATCTTTTCAACATCAATGCTGGCATTGTGAAATCTCTTTGTACCGCTATTGCCAAGTATTGCCCTAACGCTCTTATTAATATGATAAGCAACCCCGTGAATTCCACTGTCCCAATTGCTGCTGAAGTTTTCAAGAAAGCAGGGACATACGATGAGAAGAAACTGTTTGGTGTTACCACACTTGACGTGGTTAGGGCTAAGACCTTCTACGCTGGAAAGGCAAATATTCCAGTTGCTGGGGTAAATGTACCTGTTGTTGGTGGCCATGCTGGAATAACCATTCTCCCATTGTTTTCGCAAGCCACACCTAAAGCCAACAATTTGTCTGATGAAGAAATTAAGGCTCTCACAAAACGAACTCAAGATGGTGGGACAGAAGTTGTGGAAGCGAAGGCTGGAAAGGGTTCAGCTACCCTCTCAATGGCTTATGCCGGTGCCATCTTTGCAGATGCATGCTTGAAGGGACTTAATGGAGTTCCAGATGTTGTAGAATGTTCATTTGTGCAGTCAACCATCACTGAACTACCTTTCTTTGCATCTAAGGTGAGGCTGGGGAAGAATGGGGTGGAGGAAGTGCTAGGGTTGGGCCCACTTACAGACTTTGAGAAAGAAGGATTGGAAGCACTGAAGCCGGAGCTTAAAAGCTCTATTGAGAAGGGAATCAAATTTGCCAACCAGAGCTAA

Network for GWHGAAZE002647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00056.24	Ldh_1_N	35	177	8.40E-49
PF02866.19	Ldh_1_C	179	343	9.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00026	MDH2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0006108	biological_process	malate metabolic process
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity
GO:0030060	molecular_function	L-malate dehydrogenase activity
GO:0016615	molecular_function	malate dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	122.771
	SRR3591706	second leaf	63.881
	SRR3591707	mature leaf	42.362
	SRR3591708	Shoot apex	78.150
	SRR3591709	Stem	90.014
	SRR3591710	White floral bud	99.841
	SRR3591711	White flower	136.932
	SRR3591712	Green floral bud	138.275
	SRR3591713	Yellow flower	93.141
SRP173429	SRR8316895	Juvenile bud stage	79.381
	SRR8316896	Juvenile bud stage	129.755
	SRR8316897	Juvenile bud stage	68.215
	SRR8316894	Third green stage	52.441
	SRR8316900	Third green stage	161.612
	SRR8316901	Third green stage	152.530
	SRR8316898	Complete white stage	46.617
	SRR8316899	Complete white stage	96.413
	SRR8316903	Complete white stage	83.599
	SRR8316902	Silver flowering stage	64.376
	SRR8316904	Silver flowering stage	77.424
	SRR8316905	Silver flowering stage	33.426
	SRR8316906	Gold flowering stage	96.738
	SRR8316907	Gold flowering stage	109.203
	SRR8316908	Gold flowering stage	124.157
SRP132670	SRR6706286	Control	105.508
	SRR6706287	Light intensity 50%	106.954
	SRR6706288	Light intensity 20%	114.868
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.713
	CNS0095593	Slightly white alabastrum(diploid) 2	112.183
	CNS0095594	Slightly white alabastrum(diploid) 3	93.919
	CNS0095595	Whole white alabastrum(diploid) 2	87.035
	CNS0095596	Whole white alabastrum(diploid) 3	85.366
	CNS0095597	Whole white alabastrum(diploid) 4	61.105
	CNS0095598	Silvery flower (diploied) 1	56.823
	CNS0095599	Silvery flower (diploied) 2	59.966
	CNS0095600	Silvery flower (diploied) 3	81.953
	CNS0095601	Golden flower (diploid) 1	34.859
	CNS0095602	Golden flower (diploid) 2	59.454
	CNS0095603	Golden flower (diploid) 3	56.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	117.560
	CNS0095605	Slightly white alabastrum(tetraploid) 2	100.120
	CNS0095606	Slightly white alabastrum(tetraploid) 3	131.241
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	120.087
	CNS0095610	Silvery flower (tetraploid) 1	95.979
	CNS0095611	Silvery flower (tetraploid) 2	61.744
	CNS0095612	Silvery flower (tetraploid) 3	85.210
	CNS0095613	Golden flower (tetraploid) 1	34.435
	CNS0095614	Golden flower (tetraploid) 2	68.658
	CNS0095615	Golden flower (tetraploid) 3	41.960
CRA001975	CRR073297	Stem 1	117.540
	CRR073298	Stem 2	115.564
	CRR073299	Stem 3	126.818
	CRR073300	Leaf 1	117.028
	CRR073301	Leaf 2	146.585
	CRR073302	Leaf 3	170.251
	CRR073303	Juvenile bud 1	135.551
	CRR073304	Juvenile bud 2	120.297
	CRR073305	Juvenile bud 3	152.295
	CRR073306	Third green 1	102.982
	CRR073307	Third green 2	98.918
	CRR073308	Third green 3	95.091
	CRR073309	Second white 1	130.297
	CRR073310	Second white 2	98.871
	CRR073311	Second white 3	85.394
	CRR073312	Silver flowering 1	113.790
	CRR073313	Silver flowering 2	131.624
	CRR073314	Silver flowering 3	121.802
	CRR073315	Gold flowering 1	44.749
	CRR073316	Gold flowering 2	56.314
	CRR073317	Gold flowering 3	49.173
	CRR073318	Tawny withering 1	73.508
	CRR073319	Tawny withering 2	74.794
	CRR073320	Tawny withering 3	77.628