Gene detail

Detail information of GWHGAAZE002642

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285377.1	2.3148E-137	PREDICTED: UBP1-associated protein 2C [Vitis vinifera]
COG	YP_001424629.2	7E-10	glycine-rich RNA-binding protein
Swissprot	tr\|Q9LKA4\|UBA2C_ARATH	2E-98	UBP1-associated protein 2C
trEMBL	tr\|A5ADJ5\|A5ADJ5_VITVI	9E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66609.1}
TAIR10	AT3G15010.2	4E-83	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83286039	83289405	+
GWHAAZE00000001	mRNA	83286039	83289405	+
GWHAAZE00000001	exon	83286039	83286402	+
GWHAAZE00000001	exon	83288162	83289121	+
GWHAAZE00000001	exon	83289218	83289405	+
GWHAAZE00000001	CDS	83286039	83286402	+
GWHAAZE00000001	CDS	83288162	83289121	+
GWHAAZE00000001	CDS	83289218	83289405	+

Transcript Sequence
>GWHTAAZE002646 TTTCATCACTCCACTCTCCGACATTCAAATCATCAATTCAAACCTCAAATGGACCTCATCAAGAAGCGAAAGCTAGAAGAGAACGGCGACTTCATCACCAATCCTTACAAACTCTCCACCGAGGACGCTCGCAAAATCATCTCACCCTTCACTAACGACCAACTCCTCGACATCCTCCAAAATGCCGTCATTAACCACCCCGACGTACTCGACGCCGTCCGATCAATCGCCGATCGAGACCTCGACCAGCGGAAGCTATTTATCCGAGGCCTCGGCTGGGACATCACCTCCGAAAATCTCCGCACTATCTTCTCCCAATACGGCGAGCTCATAGAAGCCACTGTAGTACCCGATAAGGCCACAGGTAAGAGCAGGGGATTCGGTTTCATCACATTCAAGCATGTTGACGGAGCTATTCTGGCTTTAAAAGAACCGAACAAGAAAATTGAGACTCGTATGACTATAACACAACTAGCCTCTGCTGGAATAACAGGGCCGATTGGGACACCTCAACCCCAATCGACGAAGGTGTTAGGGAGGAAGATATTTGTAGGGAATGTGCCGTATGATATGCCAGCGGATAGGTTATTGTCACACTTCTTGTCGTATGGTGAGGTTGAGGATGGTCCGTTAGGGTTTGATAAGGCTACGGGGAAGTCCAAGGGGTACGCACTTTTTATTTATAAGACTGAAGAGGCGGCCAGGGCATCTCTGGTTGATCCAATTAAGACAATTGATGGGCATCAGGTGCACTGTAAATTTGCTGATGTGAAGAAAGTTAAGCCAGGGGTGGCCCAGGTTGGGGTTTCGGCTGCTTCTATAGGAGTTCAGGGAACAGTTGGAGCTCTGGCTGCAACAATTGCGGCTCCAGTTGCTCCCGGAGGAGTTCAAGGAACAATTGGGGCTCATGCTCGAACTGGGGGAACTCAGGGAAGTATAGGGGCTCAGGCTCCTCCCGGAGGAGCTCAGGGAAATATTGGTGCTCCAGTAGAGGCACCTGGTAATGGGCTTGGATTTGGAGTGCACCCACAGGATTCAGCAGCAGGTCCAATTCCATCACAGTATGGATTGCCTGGTGGAGGTGGAATTCCATCTTATGGTGGGTTTTCAGGTGGAGTACAGGGACAGTCGCCTATAAGTCATCATACTCCACTAAATTATCCACTAAATTACTCTTTGGGTAGTGGTGCTGGTTTGTCGTACGTGGGTGGTGTTCCAGGGGTGTCGTCCCTGGGTAGCCAAGTACCGTCTTCTTTGGGTATTGCTGGTGGGTTTGGTTCTGGGCTTGCTGGCCCTTACGGTGGTTCCCATTTTGGCGGTCCTGGGAGATTGGGTGGTGCTGGAGCAGGATTGAGTGATGGAGCTTCGGTAGGGAGATTGGGTGGTGCTGGCATCGTTTTGGGTGGTTCAGGTCGTGGTTCTTCACTCTATGGGTTGCCGCCAAGCTCGGCCAGAATGCCTTCTGGTGGTTATCCTGCAAGTGCGCACTATAGCTTGTCATCTTCTGGATAA

Network for GWHGAAZE002642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	86	150	5.80E-17
PF00076.23	RRM_1	182	239	1.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.666
	SRR3591706	second leaf	7.433
	SRR3591707	mature leaf	6.467
	SRR3591708	Shoot apex	11.629
	SRR3591709	Stem	7.439
	SRR3591710	White floral bud	7.583
	SRR3591711	White flower	6.165
	SRR3591712	Green floral bud	8.704
	SRR3591713	Yellow flower	4.027
SRP173429	SRR8316895	Juvenile bud stage	9.146
	SRR8316896	Juvenile bud stage	9.389
	SRR8316897	Juvenile bud stage	4.676
	SRR8316894	Third green stage	4.935
	SRR8316900	Third green stage	10.022
	SRR8316901	Third green stage	10.177
	SRR8316898	Complete white stage	3.300
	SRR8316899	Complete white stage	14.597
	SRR8316903	Complete white stage	5.235
	SRR8316902	Silver flowering stage	1.099
	SRR8316904	Silver flowering stage	2.855
	SRR8316905	Silver flowering stage	1.516
	SRR8316906	Gold flowering stage	4.874
	SRR8316907	Gold flowering stage	4.152
	SRR8316908	Gold flowering stage	5.354
SRP132670	SRR6706286	Control	17.936
	SRR6706287	Light intensity 50%	17.722
	SRR6706288	Light intensity 20%	18.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.123
	CNS0095593	Slightly white alabastrum(diploid) 2	6.244
	CNS0095594	Slightly white alabastrum(diploid) 3	6.725
	CNS0095595	Whole white alabastrum(diploid) 2	5.984
	CNS0095596	Whole white alabastrum(diploid) 3	3.898
	CNS0095597	Whole white alabastrum(diploid) 4	3.116
	CNS0095598	Silvery flower (diploied) 1	9.304
	CNS0095599	Silvery flower (diploied) 2	6.147
	CNS0095600	Silvery flower (diploied) 3	5.714
	CNS0095601	Golden flower (diploid) 1	7.631
	CNS0095602	Golden flower (diploid) 2	9.520
	CNS0095603	Golden flower (diploid) 3	8.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.829
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.580
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.565
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.018
	CNS0095610	Silvery flower (tetraploid) 1	4.719
	CNS0095611	Silvery flower (tetraploid) 2	5.074
	CNS0095612	Silvery flower (tetraploid) 3	4.602
	CNS0095613	Golden flower (tetraploid) 1	2.075
	CNS0095614	Golden flower (tetraploid) 2	5.275
	CNS0095615	Golden flower (tetraploid) 3	3.874
CRA001975	CRR073297	Stem 1	12.064
	CRR073298	Stem 2	11.334
	CRR073299	Stem 3	10.906
	CRR073300	Leaf 1	12.298
	CRR073301	Leaf 2	11.797
	CRR073302	Leaf 3	7.633
	CRR073303	Juvenile bud 1	8.746
	CRR073304	Juvenile bud 2	5.080
	CRR073305	Juvenile bud 3	13.853
	CRR073306	Third green 1	11.929
	CRR073307	Third green 2	6.970
	CRR073308	Third green 3	10.126
	CRR073309	Second white 1	3.030
	CRR073310	Second white 2	3.984
	CRR073311	Second white 3	3.948
	CRR073312	Silver flowering 1	1.694
	CRR073313	Silver flowering 2	1.752
	CRR073314	Silver flowering 3	0.832
	CRR073315	Gold flowering 1	8.361
	CRR073316	Gold flowering 2	9.681
	CRR073317	Gold flowering 3	11.728
	CRR073318	Tawny withering 1	11.399
	CRR073319	Tawny withering 2	7.449
	CRR073320	Tawny withering 3	11.081