Gene detail

Detail information of GWHGAAZE002640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619738.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Nicotiana tomentosiformis]
COG	YP_007779934.1	3E-25	Serine/threonine protein kinase
Swissprot	tr\|C0LGH3\|Y5614_ARATH	1E-109	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor)
trEMBL	tr\|A0A061FFI6\|A0A061FFI6_THECC	0	Kinase superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY13214.1}
TAIR10	AT1G16670.1	2E-141	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	83257430	83265430	+
GWHAAZE00000001	mRNA	83257430	83265430	+
GWHAAZE00000001	exon	83257430	83257502	+
GWHAAZE00000001	exon	83257733	83257866	+
GWHAAZE00000001	exon	83258383	83258593	+
GWHAAZE00000001	exon	83258687	83258924	+
GWHAAZE00000001	exon	83259467	83259617	+
GWHAAZE00000001	exon	83260861	83261221	+
GWHAAZE00000001	exon	83262058	83262111	+
GWHAAZE00000001	exon	83265055	83265286	+
GWHAAZE00000001	exon	83265385	83265430	+
GWHAAZE00000001	CDS	83257430	83257502	+
GWHAAZE00000001	CDS	83257733	83257866	+
GWHAAZE00000001	CDS	83258383	83258593	+
GWHAAZE00000001	CDS	83258687	83258924	+
GWHAAZE00000001	CDS	83259467	83259617	+
GWHAAZE00000001	CDS	83260861	83261221	+
GWHAAZE00000001	CDS	83262058	83262111	+
GWHAAZE00000001	CDS	83265055	83265286	+
GWHAAZE00000001	CDS	83265385	83265430	+

Transcript Sequence
>GWHTAAZE002644 ATGGCTTGCTTTACTATCTGTTTTAGCAAGAAGGCAGCTCTCCCACCTAAGCAAACAATAGAGCTTGAAGAAGGGTCTCATATGGATACAGAGGTTTCAGGTGTTGAGAACATTAAACTATTCTCTTACAAAGAATTGCGAATTGCCACTGAAAACTTCAGTCCAGACAATAAAATTGGGGAGGGAGGTTTCGGTTCTGTCTACAAGGGAAGACTAAAAGATGGTACATTGGGTGCTATAAAGGTGCTTTCTGTTGAGTCAAGGCAGGGTTTACGTGAATTCCTGACAGAGATAACTGTGATATCAGATATAGAGCATGAAAACTTGGTTAAGTTGTACGGTTGTTGTGTGGAAGGACAACATAGAATCTTAGTGTATGGCTACCTTGAAAATAATAGCCTTGCTCAAACTCTTCTAGGTAAAGGGTTCAGTAACATTCAATTTACCTGGAATGTGCGGACTAAAATCTGCATAGGGATTGCAAGGGGGCTTCTGTTCCTTCATGAGGAAGTTGAGCCTCATATCGTTCACAGAGACATTAAGGCAAGCAATATTCTCCTCGACAAAGAACTTAACCCAAAGATTTCAGATTTTGGTCTTGCAAAGCTTTTTCCATCTAACGTGACTCATATTAGCACACGAGTAGCAGGAACTTTAGGGTATTTGGCCCCTGAGTATGCGATACGAGGCCAGTTGACAAGGAAAGCAGATATTTATAGTTTTGGTGTTCTCCTTGTGGAAATCGTCAGTGGAAGATGCAACCAGAACAACCGGTTACCTGTTGAAGAACAATATCTTCTAGAAAGGGCATGGAAATTATACGAGAAAGGGGAGCTGGTGGGGCTGGTGGACACCTCGTTGGAAGAGGACTTCAATATTGATGAGGCTTGCAGATACTTGAAGATTGGCCTTCTTTGCACCCAAGATGTGCCGAAGCTCCGGCCATCCATGCCTAATATAGTAAAGATGCTAACGGGTGCGATGAGTGTGGATGACCAGAAGATATCAAGGCCGGGCCTAATTTCTGAGTTAATGGATTTTAAAACCAGGAAGAATAATGCATCACATTCACCTTCTACTAGCTCAGGGAAGCAGGATAATTCCTTGTCATCAGGGAACACAACTATGACACATGCCACTATGACCTTCACTTCAATATATGACCGAAATTTTTATGGTGTAAATCTATCACCTGGAACTGGGGAGTATGGCGCAACTGACTATATCGACCGGCTCGGAGATCCTGGCCTATCGAAGGAGAACCGTACGGATGGCGATGATACAGAAGAAGCGCTGGAGAAATTTAGCCTCATCTGGGAAGTTGACCGGTTTAAAAAACCAGACGCAGGCGATGAGAAGGTCGAGGTCGACGAAGCAAATGCCGGCGGAGTAGAAGGAGACCTACCAAAGGGTTTAAGGCGGTGTTTAGGTGTTGGTGGGACGCTCAATGTCAAGGTTCAACAACAGATGTGGAGACCTGTGGGGATGGATAGACATTGA

Network for GWHGAAZE002640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	56	322	8.50E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.556
	SRR3591706	second leaf	4.756
	SRR3591707	mature leaf	6.621
	SRR3591708	Shoot apex	4.916
	SRR3591709	Stem	5.568
	SRR3591710	White floral bud	4.601
	SRR3591711	White flower	8.634
	SRR3591712	Green floral bud	3.155
	SRR3591713	Yellow flower	11.909
SRP173429	SRR8316895	Juvenile bud stage	3.364
	SRR8316896	Juvenile bud stage	5.409
	SRR8316897	Juvenile bud stage	2.466
	SRR8316894	Third green stage	2.053
	SRR8316900	Third green stage	3.500
	SRR8316901	Third green stage	3.255
	SRR8316898	Complete white stage	1.454
	SRR8316899	Complete white stage	7.393
	SRR8316903	Complete white stage	2.777
	SRR8316902	Silver flowering stage	3.718
	SRR8316904	Silver flowering stage	5.072
	SRR8316905	Silver flowering stage	2.756
	SRR8316906	Gold flowering stage	13.132
	SRR8316907	Gold flowering stage	9.438
	SRR8316908	Gold flowering stage	17.457
SRP132670	SRR6706286	Control	3.469
	SRR6706287	Light intensity 50%	2.996
	SRR6706288	Light intensity 20%	2.606
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.104
	CNS0095593	Slightly white alabastrum(diploid) 2	3.257
	CNS0095594	Slightly white alabastrum(diploid) 3	3.245
	CNS0095595	Whole white alabastrum(diploid) 2	2.601
	CNS0095596	Whole white alabastrum(diploid) 3	0.858
	CNS0095597	Whole white alabastrum(diploid) 4	1.934
	CNS0095598	Silvery flower (diploied) 1	9.152
	CNS0095599	Silvery flower (diploied) 2	5.636
	CNS0095600	Silvery flower (diploied) 3	5.111
	CNS0095601	Golden flower (diploid) 1	9.136
	CNS0095602	Golden flower (diploid) 2	8.691
	CNS0095603	Golden flower (diploid) 3	7.924
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.886
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.508
	CNS0095610	Silvery flower (tetraploid) 1	6.932
	CNS0095611	Silvery flower (tetraploid) 2	4.647
	CNS0095612	Silvery flower (tetraploid) 3	4.055
	CNS0095613	Golden flower (tetraploid) 1	5.836
	CNS0095614	Golden flower (tetraploid) 2	6.324
	CNS0095615	Golden flower (tetraploid) 3	5.035
CRA001975	CRR073297	Stem 1	3.375
	CRR073298	Stem 2	5.009
	CRR073299	Stem 3	3.697
	CRR073300	Leaf 1	4.142
	CRR073301	Leaf 2	4.387
	CRR073302	Leaf 3	3.171
	CRR073303	Juvenile bud 1	3.406
	CRR073304	Juvenile bud 2	1.987
	CRR073305	Juvenile bud 3	2.104
	CRR073306	Third green 1	1.207
	CRR073307	Third green 2	0.551
	CRR073308	Third green 3	0.796
	CRR073309	Second white 1	0.955
	CRR073310	Second white 2	2.500
	CRR073311	Second white 3	1.360
	CRR073312	Silver flowering 1	1.772
	CRR073313	Silver flowering 2	1.254
	CRR073314	Silver flowering 3	1.153
	CRR073315	Gold flowering 1	6.287
	CRR073316	Gold flowering 2	12.338
	CRR073317	Gold flowering 3	6.519
	CRR073318	Tawny withering 1	6.639
	CRR073319	Tawny withering 2	9.139
	CRR073320	Tawny withering 3	2.040