Gene detail

Detail information of GWHGAAZE002605

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI20142.3	0	unnamed protein product [Vitis vinifera]
COG	YP_001958461.1	1E-26	hypothetical protein Aasi_1443
Swissprot	tr\|C0LGG9\|Y5344_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g53440 (Precursor)
trEMBL	tr\|E0CS43\|E0CS43_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20142.3}
TAIR10	AT1G53440.1	5E-173	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82593215	82596251	+
GWHAAZE00000001	mRNA	82593215	82596251	+
GWHAAZE00000001	exon	82593215	82593265	+
GWHAAZE00000001	exon	82593576	82593725	+
GWHAAZE00000001	exon	82594872	82595082	+
GWHAAZE00000001	exon	82595162	82595399	+
GWHAAZE00000001	exon	82595531	82595681	+
GWHAAZE00000001	exon	82595835	82596251	+
GWHAAZE00000001	CDS	82593215	82593265	+
GWHAAZE00000001	CDS	82593576	82593725	+
GWHAAZE00000001	CDS	82594872	82595082	+
GWHAAZE00000001	CDS	82595162	82595399	+
GWHAAZE00000001	CDS	82595531	82595681	+
GWHAAZE00000001	CDS	82595835	82596251	+

Transcript Sequence
>GWHTAAZE002609 ATGTTGACACTGGCGGGCTATCTGTTGGAGCCATTGTTGGCATTGCGCTTGCAATTTCTGATTTCTTCTATCCTTGTTACAGAACTTCGAGCTCTAGAACTACAAACAGGTTATTTTAGCCTAAGACAGATCAAAACCGCTACCGGTAACTTCGATCCCAAAAATAAGATTGGAGAAGGAGGATTTGGACCAGTCTACAAGGGTGTACTGTCAGATGGTGCAGTAATTGCTGTGAAGCAGCTCTCAGCCAAATCAAAGCAGGGAAACCGGGAATTTGTGAATGAGATAGGCATGATATCTGCTTTACAACACCCAAATCTTGTGAAGCTTTTTGGCTGTTGTATTGAAGGAAATCAGTTGTTGCTAGTGTATGAGTACATGGAAAACAATAGTCTTGCTCGTGCAATTTTTGGACGTGAGGAGCAGAAGCTAAACCTAGACTGGCCAACAAGGAAGAAGATATGCATAGGGATAGCAAAAGGCTTAGCTTATCTTCATGAGGAGTCAAGGTTGAAAATTGTTCACAGAGACATAAAGGCTACCAATGTGCTACTTGACAAGGATCTTAATGCTAAGATATCAGACTTTGGTTTGGCTAAGCTTGATGAAGAAGAGAACACTCATATCAGCACACGAATTGCTGGAACAATAGGATATATGGCTCCAGAATACGCAATGAGGGGTTACTTGACAGACAAAGCGGATGTTTATAGCTTTGGAGTTGTTGCCCTAGAAATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCTAAGGAGGAGTTTGTCTACCTTCTTGATTGGGCTTATGTGCTAGAAGAGCAAGGGAACCTATTAGAACTCGTGGACCCAGTCCTCGAGTCGCACTATTCGAAACAAGAAGCAAGGACCATGTTAAACCTGGCTCTGTTATGCACCAACCCATCACCCACCCTTAGGCCATCCATGTCCTCAGTAGTGAGTATGCTCGAAGGCAAAATCCCAGTCCAAGCACCACTAATCAAACGTAGTGCAATGAACGAGGACATGAGGTTCAGGGCCTTTGAGACATTATCACAGGATAGCCAAACAAATGTCTCTACGATCTCTGACAATAGTCAGGGCCCAAGGAGCATGTCTATGGATGGTCCGTGGATCGACTCCTCGATTTCCGCCCAAAGTAAGGACGACACTACCCGGGATCATCATTCAACATCCAAGCTTTTTCCTGATCTTTTATGA

Network for GWHGAAZE002605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	54	321	2.60E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.940
	SRR3591706	second leaf	24.323
	SRR3591707	mature leaf	24.040
	SRR3591708	Shoot apex	35.624
	SRR3591709	Stem	37.165
	SRR3591710	White floral bud	67.419
	SRR3591711	White flower	62.311
	SRR3591712	Green floral bud	36.816
	SRR3591713	Yellow flower	48.071
SRP173429	SRR8316895	Juvenile bud stage	31.691
	SRR8316896	Juvenile bud stage	43.977
	SRR8316897	Juvenile bud stage	21.070
	SRR8316894	Third green stage	17.465
	SRR8316900	Third green stage	26.082
	SRR8316901	Third green stage	34.948
	SRR8316898	Complete white stage	34.572
	SRR8316899	Complete white stage	47.401
	SRR8316903	Complete white stage	62.304
	SRR8316902	Silver flowering stage	54.927
	SRR8316904	Silver flowering stage	71.352
	SRR8316905	Silver flowering stage	40.498
	SRR8316906	Gold flowering stage	107.807
	SRR8316907	Gold flowering stage	110.062
	SRR8316908	Gold flowering stage	163.695
SRP132670	SRR6706286	Control	22.697
	SRR6706287	Light intensity 50%	25.413
	SRR6706288	Light intensity 20%	23.745
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.963
	CNS0095593	Slightly white alabastrum(diploid) 2	23.612
	CNS0095594	Slightly white alabastrum(diploid) 3	21.147
	CNS0095595	Whole white alabastrum(diploid) 2	15.583
	CNS0095596	Whole white alabastrum(diploid) 3	15.176
	CNS0095597	Whole white alabastrum(diploid) 4	16.505
	CNS0095598	Silvery flower (diploied) 1	58.446
	CNS0095599	Silvery flower (diploied) 2	43.915
	CNS0095600	Silvery flower (diploied) 3	42.529
	CNS0095601	Golden flower (diploid) 1	42.378
	CNS0095602	Golden flower (diploid) 2	45.911
	CNS0095603	Golden flower (diploid) 3	43.706
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.399
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.816
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.865
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.888
	CNS0095610	Silvery flower (tetraploid) 1	25.301
	CNS0095611	Silvery flower (tetraploid) 2	23.275
	CNS0095612	Silvery flower (tetraploid) 3	54.772
	CNS0095613	Golden flower (tetraploid) 1	10.584
	CNS0095614	Golden flower (tetraploid) 2	17.466
	CNS0095615	Golden flower (tetraploid) 3	12.453
CRA001975	CRR073297	Stem 1	54.869
	CRR073298	Stem 2	48.975
	CRR073299	Stem 3	43.658
	CRR073300	Leaf 1	42.155
	CRR073301	Leaf 2	36.455
	CRR073302	Leaf 3	24.026
	CRR073303	Juvenile bud 1	28.722
	CRR073304	Juvenile bud 2	36.918
	CRR073305	Juvenile bud 3	32.500
	CRR073306	Third green 1	49.712
	CRR073307	Third green 2	44.042
	CRR073308	Third green 3	49.072
	CRR073309	Second white 1	59.155
	CRR073310	Second white 2	61.756
	CRR073311	Second white 3	59.182
	CRR073312	Silver flowering 1	51.460
	CRR073313	Silver flowering 2	34.965
	CRR073314	Silver flowering 3	37.475
	CRR073315	Gold flowering 1	32.512
	CRR073316	Gold flowering 2	43.000
	CRR073317	Gold flowering 3	26.651
	CRR073318	Tawny withering 1	26.431
	CRR073319	Tawny withering 2	28.439
	CRR073320	Tawny withering 3	20.735