Gene detail

Detail information of GWHGAAZE002595

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762543.1	1.5903E-127	PREDICTED: probable salt tolerance-like protein At1g78600 [Nicotiana sylvestris]
Swissprot	tr\|Q9SYM2\|BBX22_ARATH	2E-76	B-box zinc finger protein 22 {ECO:0000303\|PubMed:19920209}
trEMBL	tr\|A0A068UCQ5\|A0A068UCQ5_COFCA	3E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP06052.1}
TAIR10	AT1G78600.2	7E-37	light-regulated zinc finger protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82447934	82450659	+
GWHAAZE00000001	mRNA	82447934	82450659	+
GWHAAZE00000001	exon	82447934	82448122	+
GWHAAZE00000001	exon	82449049	82449486	+
GWHAAZE00000001	exon	82450375	82450659	+
GWHAAZE00000001	CDS	82447934	82448122	+
GWHAAZE00000001	CDS	82449049	82449486	+
GWHAAZE00000001	CDS	82450375	82450659	+

Transcript Sequence
>GWHTAAZE002599 ATGAAGATTCAGTGCAACGTGTGCGAGGTGGCAGAGGCCAAAGTACTCTGCTGGGCCGACGAGGCCGCCCTTTGCTTGGATTGCGATGACAAGGTTCATGCGGCTAACAAGCTCGCCACCAAGCATCAGAGGGTCTCTCTCTCTTCCAATCCCAATTCATCTCACATGCCCAACTGTGATATTTGTCAGGAAACAGTTGGCTATTTCTTTTGTTTGGAAGATAGAGCTTTACTATGCAGGAAATGTGATGTTGCCATACACACAGCCAATGCTTACGTTTCAGCTCACCAAAGGTTTCTGTTTACTGGGGTGAAAGTAGGGCTTGAACCTACTGACCCTGGTGTGTCATTCTCTTCGGGCAAATCACTCTCTTCTGAGAAAATGTCAGAAATAGAACTACATTCTTCATCTAGGACCGAGTGCCCAGTGCCATTGGCTGCTAAATGCAACAAAGTTTTACCTGTCCAATTTGGGGATTTTGAACCGACTAAATCGACTTTTGCTGGAGGTTCTACAACTGGAAGCACTCAACATTGGTATTTAGATGATTTTTTGGGGCTAACTGAACCCAATCAGAATTATGGGTATATGGATAATAGCTCATCCAAGGTAATTGTACCCTCTAACGCTGATAGTGATAATAAGCTTGGAGAATCAGACTGCTCGCCAATTTTAAGAGCTGCTGAGATAGAGCTAGATGTTGAAGAATGCTTGGGTCAGGTTCCCAACTCATCCTGGTTGGTCCCAAAGATTACTTCCCCGCCTACAACCTCAGGACTTTACTGGCCGAAGAATTATCAGCCTCGAATTGACACTGACACTGCAGCTTTCGTTCCCGACATATACAGCTCACCAGTCCAGAATCCTTGTCATTTTAATCCAAGGGGCACTAGCATGAAACAGAGGCGGTAA

Network for GWHGAAZE002595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	56	88	6.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.230
	SRR3591706	second leaf	5.841
	SRR3591707	mature leaf	14.318
	SRR3591708	Shoot apex	19.853
	SRR3591709	Stem	15.591
	SRR3591710	White floral bud	8.147
	SRR3591711	White flower	11.626
	SRR3591712	Green floral bud	5.429
	SRR3591713	Yellow flower	12.403
SRP173429	SRR8316895	Juvenile bud stage	9.170
	SRR8316896	Juvenile bud stage	11.574
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	3.602
	SRR8316900	Third green stage	8.024
	SRR8316901	Third green stage	7.271
	SRR8316898	Complete white stage	2.799
	SRR8316899	Complete white stage	16.328
	SRR8316903	Complete white stage	5.336
	SRR8316902	Silver flowering stage	3.573
	SRR8316904	Silver flowering stage	4.621
	SRR8316905	Silver flowering stage	2.014
	SRR8316906	Gold flowering stage	11.145
	SRR8316907	Gold flowering stage	9.942
	SRR8316908	Gold flowering stage	2.449
SRP132670	SRR6706286	Control	12.966
	SRR6706287	Light intensity 50%	9.449
	SRR6706288	Light intensity 20%	9.762
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.570
	CNS0095593	Slightly white alabastrum(diploid) 2	8.241
	CNS0095594	Slightly white alabastrum(diploid) 3	6.724
	CNS0095595	Whole white alabastrum(diploid) 2	6.659
	CNS0095596	Whole white alabastrum(diploid) 3	3.664
	CNS0095597	Whole white alabastrum(diploid) 4	5.868
	CNS0095598	Silvery flower (diploied) 1	30.330
	CNS0095599	Silvery flower (diploied) 2	14.118
	CNS0095600	Silvery flower (diploied) 3	13.828
	CNS0095601	Golden flower (diploid) 1	29.416
	CNS0095602	Golden flower (diploid) 2	27.529
	CNS0095603	Golden flower (diploid) 3	26.264
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.537
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.424
	CNS0095610	Silvery flower (tetraploid) 1	10.739
	CNS0095611	Silvery flower (tetraploid) 2	16.084
	CNS0095612	Silvery flower (tetraploid) 3	7.038
	CNS0095613	Golden flower (tetraploid) 1	6.823
	CNS0095614	Golden flower (tetraploid) 2	13.333
	CNS0095615	Golden flower (tetraploid) 3	7.559
CRA001975	CRR073297	Stem 1	22.864
	CRR073298	Stem 2	19.564
	CRR073299	Stem 3	22.932
	CRR073300	Leaf 1	9.788
	CRR073301	Leaf 2	11.525
	CRR073302	Leaf 3	14.339
	CRR073303	Juvenile bud 1	8.301
	CRR073304	Juvenile bud 2	6.883
	CRR073305	Juvenile bud 3	12.040
	CRR073306	Third green 1	0.724
	CRR073307	Third green 2	1.950
	CRR073308	Third green 3	2.209
	CRR073309	Second white 1	2.607
	CRR073310	Second white 2	2.515
	CRR073311	Second white 3	3.783
	CRR073312	Silver flowering 1	2.555
	CRR073313	Silver flowering 2	1.864
	CRR073314	Silver flowering 3	4.198
	CRR073315	Gold flowering 1	36.704
	CRR073316	Gold flowering 2	37.449
	CRR073317	Gold flowering 3	42.142
	CRR073318	Tawny withering 1	35.583
	CRR073319	Tawny withering 2	22.946
	CRR073320	Tawny withering 3	27.976