Gene detail

Detail information of GWHGAAZE002593

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762546.1	1.3732E-149	PREDICTED: NADH kinase isoform X3 [Nicotiana sylvestris]
COG	YP_008156006.1	2E-36	hypothetical protein SCE1572_48320
Swissprot	tr\|Q500Y9\|NADHK_ARATH	2E-127	NADH kinase
trEMBL	tr\|V4VRC3\|V4VRC3_9ROSI	1E-148	Uncharacterized protein {ECO:0000313\|EMBL:ESR55589.1}
TAIR10	AT1G78590.1	2E-87	NAD(H) kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82433586	82437104	+
GWHAAZE00000001	mRNA	82433586	82437104	+
GWHAAZE00000001	exon	82433586	82433606	+
GWHAAZE00000001	exon	82434216	82434461	+
GWHAAZE00000001	exon	82434998	82435078	+
GWHAAZE00000001	exon	82435822	82435973	+
GWHAAZE00000001	exon	82436723	82437104	+
GWHAAZE00000001	CDS	82433586	82433606	+
GWHAAZE00000001	CDS	82434216	82434461	+
GWHAAZE00000001	CDS	82434998	82435078	+
GWHAAZE00000001	CDS	82435822	82435973	+
GWHAAZE00000001	CDS	82436723	82437104	+

Transcript Sequence
>GWHTAAZE002597 ATGACTGTGCCATACAATCTGGTGTTGCGTTATCTGGACAACAGGTGTATGGTTCATAAAGATGCCATAAACTTTTGTAGGAATATTTTGCAGAAAAAGTCAGTTGATTGGGAACCTGTTTTCGGAAGCAATCTATCAAAACCAATCCAAGATGTGGATCTGGTTGTGACTGTAGGTGGTGATGGCACACTTTTGCAGGCATGCCATTTCGTCAGTGATTCAATTCCAGTTCTAGGGTTGAATTCTGATCCCACTCAAGTTGAAGAGGTGGAAGAATTCAAGGAAGAGTTTGATGCTACAAGAAGCACTGGTTTTCTTTGTGCAGCAACTGTTGAAAACTTTGAAAAAATATTGGATAGCATCCTTGAAGGTCAGACTGCTCCTAGTGAATTGTCAAGAATGGCAATCCGTGTTAACTCAGAACTACTACCAACATATGCCCTTAATGACGTTTTAATTGCACACCCTAATCCTGCAACTGTTTCTCGGTTCTCGATCAGAATCAAGAAAGATGGCCGTTCGTGCTCCTCTCTAGTGAAATGCCGCTCAAGCGGCCTCAGAGTCTCAACAGCCGCCGGATCGACAGCTGCAATGCTCTCAGCCGGTGGATTTGCAATGCCCATTTTATCCAAAGATCTACAGTACATGGTAAGGGAGCCCATTTCGCCTGGTGCAGACACCTCTAACTTTATGCATGGGGTCGTAAAATCTGGCGAGTTCATGGACACCACATGGTTTTGCAAAGAGGGGCTAATTTACATAGATGGTTATCAGAATGTTCGTTCTATCCAATATGGGGACACGATTGAACTCTCTTCCGAGGCACCAATTTTGAAACTTTTCTTGCCGCCCCACTTGTTATCATATAATCCGAGACTGTGA

Network for GWHGAAZE002593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01513.22	NAD_kinase	50	81	8.40E-08
PF01513.22	NAD_kinase	103	259	1.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00858	ppnK, NADK	Metabolic pathways	map01100
K00858	ppnK, NADK	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0019674	biological_process	NAD metabolic process
GO:0006741	biological_process	NADP biosynthetic process
GO:0003951	molecular_function	NAD+ kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.058
	SRR3591706	second leaf	0.666
	SRR3591707	mature leaf	1.728
	SRR3591708	Shoot apex	2.181
	SRR3591709	Stem	2.409
	SRR3591710	White floral bud	1.220
	SRR3591711	White flower	0.928
	SRR3591712	Green floral bud	0.944
	SRR3591713	Yellow flower	1.155
SRP173429	SRR8316895	Juvenile bud stage	0.711
	SRR8316896	Juvenile bud stage	2.693
	SRR8316897	Juvenile bud stage	0.377
	SRR8316894	Third green stage	1.356
	SRR8316900	Third green stage	2.580
	SRR8316901	Third green stage	2.652
	SRR8316898	Complete white stage	0.337
	SRR8316899	Complete white stage	2.182
	SRR8316903	Complete white stage	1.080
	SRR8316902	Silver flowering stage	0.458
	SRR8316904	Silver flowering stage	0.607
	SRR8316905	Silver flowering stage	0.085
	SRR8316906	Gold flowering stage	1.418
	SRR8316907	Gold flowering stage	0.752
	SRR8316908	Gold flowering stage	0.638
SRP132670	SRR6706286	Control	1.125
	SRR6706287	Light intensity 50%	1.144
	SRR6706288	Light intensity 20%	1.539
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.004
	CNS0095593	Slightly white alabastrum(diploid) 2	1.610
	CNS0095594	Slightly white alabastrum(diploid) 3	1.964
	CNS0095595	Whole white alabastrum(diploid) 2	2.007
	CNS0095596	Whole white alabastrum(diploid) 3	2.277
	CNS0095597	Whole white alabastrum(diploid) 4	2.084
	CNS0095598	Silvery flower (diploied) 1	1.597
	CNS0095599	Silvery flower (diploied) 2	0.806
	CNS0095600	Silvery flower (diploied) 3	1.285
	CNS0095601	Golden flower (diploid) 1	1.267
	CNS0095602	Golden flower (diploid) 2	0.903
	CNS0095603	Golden flower (diploid) 3	1.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.997
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.339
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.825
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.648
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.433
	CNS0095610	Silvery flower (tetraploid) 1	1.332
	CNS0095611	Silvery flower (tetraploid) 2	0.877
	CNS0095612	Silvery flower (tetraploid) 3	0.650
	CNS0095613	Golden flower (tetraploid) 1	0.214
	CNS0095614	Golden flower (tetraploid) 2	0.478
	CNS0095615	Golden flower (tetraploid) 3	0.094
CRA001975	CRR073297	Stem 1	1.162
	CRR073298	Stem 2	2.150
	CRR073299	Stem 3	1.062
	CRR073300	Leaf 1	1.871
	CRR073301	Leaf 2	1.621
	CRR073302	Leaf 3	1.468
	CRR073303	Juvenile bud 1	1.746
	CRR073304	Juvenile bud 2	0.662
	CRR073305	Juvenile bud 3	0.897
	CRR073306	Third green 1	0.099
	CRR073307	Third green 2	0.368
	CRR073308	Third green 3	0.444
	CRR073309	Second white 1	1.035
	CRR073310	Second white 2	0.173
	CRR073311	Second white 3	0.663
	CRR073312	Silver flowering 1	0.897
	CRR073313	Silver flowering 2	0.064
	CRR073314	Silver flowering 3	0.453
	CRR073315	Gold flowering 1	1.772
	CRR073316	Gold flowering 2	1.768
	CRR073317	Gold flowering 3	0.774
	CRR073318	Tawny withering 1	1.306
	CRR073319	Tawny withering 2	2.865
	CRR073320	Tawny withering 3	2.311