Gene detail

Detail information of GWHGAAZE002591

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFJ06909.1	0	trehalose-6-phosphate synthase [Camellia sinensis]
COG	YP_004625437.1	1E-151	alpha,alpha-trehalose-phosphate synthase
Swissprot	tr\|Q9SYM4\|TPS1_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBL	tr\|I1YP72\|I1YP72_CAMSI	0	Trehalose-6-phosphate synthase {ECO:0000313\|EMBL:AFJ06909.1}
TAIR10	AT1G78580.1	0	trehalose-6-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82344382	82363214	-
GWHAAZE00000001	mRNA	82344382	82363214	-
GWHAAZE00000001	exon	82362869	82363214	-
GWHAAZE00000001	exon	82362637	82362734	-
GWHAAZE00000001	exon	82362168	82362556	-
GWHAAZE00000001	exon	82361680	82361794	-
GWHAAZE00000001	exon	82361373	82361474	-
GWHAAZE00000001	exon	82360881	82361031	-
GWHAAZE00000001	exon	82355311	82355399	-
GWHAAZE00000001	exon	82349626	82349674	-
GWHAAZE00000001	exon	82348600	82348700	-
GWHAAZE00000001	exon	82347417	82347604	-
GWHAAZE00000001	exon	82347080	82347197	-
GWHAAZE00000001	exon	82346352	82346531	-
GWHAAZE00000001	exon	82346137	82346259	-
GWHAAZE00000001	exon	82345671	82345758	-
GWHAAZE00000001	exon	82345442	82345572	-
GWHAAZE00000001	exon	82345218	82345316	-
GWHAAZE00000001	exon	82344382	82344792	-
GWHAAZE00000001	CDS	82362869	82363214	-
GWHAAZE00000001	CDS	82362637	82362734	-
GWHAAZE00000001	CDS	82362168	82362556	-
GWHAAZE00000001	CDS	82361680	82361794	-
GWHAAZE00000001	CDS	82361373	82361474	-
GWHAAZE00000001	CDS	82360881	82361031	-
GWHAAZE00000001	CDS	82355311	82355399	-
GWHAAZE00000001	CDS	82349626	82349674	-
GWHAAZE00000001	CDS	82348600	82348700	-
GWHAAZE00000001	CDS	82347417	82347604	-
GWHAAZE00000001	CDS	82347080	82347197	-
GWHAAZE00000001	CDS	82346352	82346531	-
GWHAAZE00000001	CDS	82346137	82346259	-
GWHAAZE00000001	CDS	82345671	82345758	-
GWHAAZE00000001	CDS	82345442	82345572	-
GWHAAZE00000001	CDS	82345218	82345316	-
GWHAAZE00000001	CDS	82344382	82344792	-

Transcript Sequence
>GWHTAAZE002595 ATGCCTGGGAACAAGTACAACGGCAACTCATCTATCCCCACAAGTCGAATTGAGAGGCTCTTGAGAGAAAGAGAGCTAAGAAGGAGTAGTAAGGCTTCTCATTCAAATGACGCCACCGATAGTAACAGAGGTAGTGAGCTCTCTGAGCATGAATTGAACAGCCCAAGAGTTTCTTATGTGGAACAATACTTGGAAGGTGCCTCGGCTTTTTCTGGGCCAGATGGAGTGCCTTTTAGACAGAGACTTTTGGTGGTGGCTAATAGGCTACCGGTCTCTGCAGTTAGGAGAGGTGAGGAGACCTGGTCACTGGAGATAAGTGCAGGTGGCCTTGTGAGTGCTCTTCTGGGCGTGAAGGAGTTTGAGGCAAGATGGATTGGGTGGGCTGGTGTAAATGTACCAGACGAGGCTGGTCAGAAGGCACTTACTAAAGCATTGGCGGACAAGAGGTGTATCCCTGTATTCCTTGATGAAGAAATCGTTCATCAATACTATAACGGCTATTGCAACAACATATTATGGCCTCTTTTCCACTATCTTGGACTTCCCCAAGAAGAACGCCTTGCCACTACTAGGAGCTTTCAGTCCCAGTTTGCTGCGTATGAAAAGGCAAATCAAATGTTTGCTGATGTTGTAAATGCGCATTACGAAGAGGGCGACGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCATCATGCCTAAAGAAATATAACAGCAAAATGAAAGTTGGTTGGTTTCTCCACACACCCTTTCCGTCTTCAGAAATCCACAGGACACTGCCTTCTCGATCAGAGCTGCTGCGTGCAGTTCTTGCTGCTGATTTGGTTGGTTTCCATACTTATGATTATGCAAGGCACTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGTACACCAGAAGGAGTGGAGGATCAAGGAAGGCTTACTCGTGTGGCTGCGTTTCCTATCGGGATAGATTCAGATCGGTTCATTCGAGCGCTTGAACTTCCTCAAGTTCAGGACCACATCAAAGAATTGAAAGACAGGTTTTCTGGACGGAAGGTAATGTTAGGTGTTGATCGACTTGATATGATTAAAGGAATTCCACAGAAGATACTGGCTTTTGAAAAGTTTCTTGAGGAAAATGCAGAGTGGCGGGATAAGGTCGTTCTGCTACAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAATATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGGTTTGGAACTTTGACAGCCGTTCCGATACATCATCTGGATCGTTCCCTCGACTTTCACGCATTATGTGCACTATATGCTGTTACTGATATAGCACTAGTCACATCATTGCGAGATGGAATGAATCTTGTCAGTTATGAGTTTGTGGCATGCCAAGATTCAAAGAAAGGGGTTCTCATTCTTAGTGAGTTTGCTGGTGCTGCACAGTCTCTAGGTGCTGGAGCAATACTTGTGAACCCTTGGAACATCACAGAAGTTGCAAATTCCATAGGCACAGCTCTTAGAATGGGTGCTGAAGAAAGAGAAAAACGACATCTGCACAACTTTCATCATGTGACCACCCATACTGCTCAAGAATGGGCCGAGACTTTTGTAAGTGAATTGAATGATACCGTAGTTGAAGCTCAGCAAAGGATAAGACAAGCTCCACCTCACCTTCCAGTCAAAGATGCAATAGAGCAGTATTTGCATTCTAACAACAGATTACTCATACTGGGATTCAATGCTACATTAACAGAAGCAGTGGATACTCCTGGTAGAAGAGGGGGCGATCAAATTAGAGAGATGGAACTTAAATTGCATCCAGAGTTAAAAGAGTCCCTAGGAGCCATATGCAATGATCCAAAGACAACTATTGTTGTTCTCAGTGGAAGTGAAAGGAAAGTTCTAGATGAAAATTTTGGCGACTACAACATGTGGTTGGCAGCAGAGAACGGGATGTTTTTGCGCTATACAGAGGGAAGTTGGATGACAACAATGCCAGAACATTTAAATATGGAATGGGTCGAAAGTGTAAAGCATGTATTTGAGTATTTTACTGAAAGAACACCTCGATCGCATTATGAACGCCGTGATACTTCACTTGTATGGAATTACAAGTATGCAGATGCAGAATTTGGAAGGCTGCAAGCCAGAGATATGCTGCAGCATCTCTGGACCGGGCCAATATCTAATGCGTCCGTGGATGTTGTGCAAGGTAGCCGGTCCGTTGAGGTGAGGGCAGTTGGAGTTACCAAGGGAGCAGCAATTGACCGTATATTGGGGGAGATTGTACATAGCAAATCCATTTCAGCGCCAATTGATTATGTCCTATGCATAGGGCATTTTCTAGGGAAGGACGAAGACGTGTTCACATTTTTTGAGCCAGATCTTCCCTCTGAGTCCACCTTTGGTATTCAAAGAGCAAAAGTTACTGATGGACTAAAGCCGCCCGGTGAGAGAAGGCCACCTTCAAAGGTCCCAACTAGTAGAAGCAGCTCCAAATCATCTCACAGCAGCAAGGCTCAACGAGCTCAACCATCAAACCCAGAGAAGAAAACAGGCAACTCTAACTACTATGGCAACGGGGGGCGGCGCCAATCCCCTGACAAGACCTCGTGGAACGTGCTAGACCTCAAGGCCGAGAATTACTTCTCTTGCTCTGTGGGCCGAACTCGTACCAATGCCCGGTACCGGCTCTCAACTTCCGATGATGTTGTTGCGTTTATGAAGGAACTAGCTGATGAGTCTTCATCATCAGGTGTTTGA

Network for GWHGAAZE002591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	81	546	9.50E-187
PF02358.17	Trehalose_PPase	605	820	5.10E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0003825	molecular_function	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.740
	SRR3591706	second leaf	44.265
	SRR3591707	mature leaf	60.588
	SRR3591708	Shoot apex	38.983
	SRR3591709	Stem	110.199
	SRR3591710	White floral bud	13.852
	SRR3591711	White flower	14.745
	SRR3591712	Green floral bud	11.773
	SRR3591713	Yellow flower	7.558
SRP173429	SRR8316895	Juvenile bud stage	10.536
	SRR8316896	Juvenile bud stage	18.157
	SRR8316897	Juvenile bud stage	8.508
	SRR8316894	Third green stage	7.315
	SRR8316900	Third green stage	14.110
	SRR8316901	Third green stage	15.880
	SRR8316898	Complete white stage	2.807
	SRR8316899	Complete white stage	13.003
	SRR8316903	Complete white stage	8.546
	SRR8316902	Silver flowering stage	6.149
	SRR8316904	Silver flowering stage	10.861
	SRR8316905	Silver flowering stage	5.417
	SRR8316906	Gold flowering stage	12.992
	SRR8316907	Gold flowering stage	12.461
	SRR8316908	Gold flowering stage	15.231
SRP132670	SRR6706286	Control	11.842
	SRR6706287	Light intensity 50%	12.255
	SRR6706288	Light intensity 20%	11.937
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.924
	CNS0095593	Slightly white alabastrum(diploid) 2	19.317
	CNS0095594	Slightly white alabastrum(diploid) 3	18.044
	CNS0095595	Whole white alabastrum(diploid) 2	14.940
	CNS0095596	Whole white alabastrum(diploid) 3	9.326
	CNS0095597	Whole white alabastrum(diploid) 4	12.535
	CNS0095598	Silvery flower (diploied) 1	13.556
	CNS0095599	Silvery flower (diploied) 2	11.313
	CNS0095600	Silvery flower (diploied) 3	14.326
	CNS0095601	Golden flower (diploid) 1	7.793
	CNS0095602	Golden flower (diploid) 2	8.896
	CNS0095603	Golden flower (diploid) 3	9.732
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.943
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.400
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.483
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.650
	CNS0095610	Silvery flower (tetraploid) 1	15.021
	CNS0095611	Silvery flower (tetraploid) 2	11.921
	CNS0095612	Silvery flower (tetraploid) 3	10.317
	CNS0095613	Golden flower (tetraploid) 1	6.545
	CNS0095614	Golden flower (tetraploid) 2	10.026
	CNS0095615	Golden flower (tetraploid) 3	5.451
CRA001975	CRR073297	Stem 1	11.033
	CRR073298	Stem 2	13.116
	CRR073299	Stem 3	8.936
	CRR073300	Leaf 1	16.198
	CRR073301	Leaf 2	15.320
	CRR073302	Leaf 3	7.716
	CRR073303	Juvenile bud 1	8.203
	CRR073304	Juvenile bud 2	3.222
	CRR073305	Juvenile bud 3	11.355
	CRR073306	Third green 1	5.271
	CRR073307	Third green 2	7.201
	CRR073308	Third green 3	7.026
	CRR073309	Second white 1	4.839
	CRR073310	Second white 2	4.468
	CRR073311	Second white 3	3.300
	CRR073312	Silver flowering 1	1.957
	CRR073313	Silver flowering 2	1.820
	CRR073314	Silver flowering 3	1.898
	CRR073315	Gold flowering 1	14.177
	CRR073316	Gold flowering 2	18.614
	CRR073317	Gold flowering 3	12.490
	CRR073318	Tawny withering 1	18.774
	CRR073319	Tawny withering 2	36.055
	CRR073320	Tawny withering 3	21.814