Gene detail

Detail information of GWHGAAZE002582

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002528486.1	2.7982E-130	ATP binding protein, putative [Ricinus communis]
Swissprot	tr\|Q9SYM9\|Y1853_ARATH	1E-74	Receptor-like serine/threonine-protein kinase At1g78530
trEMBL	tr\|B9SR67\|B9SR67_RICCO	1E-130	ATP binding protein, putative {ECO:0000313\|EMBL:EEF33903.1}
TAIR10	AT1G78530.1	3E-62	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	82207204	82215785	-
GWHAAZE00000001	mRNA	82207204	82215785	-
GWHAAZE00000001	exon	82215650	82215785	-
GWHAAZE00000001	exon	82215210	82215548	-
GWHAAZE00000001	exon	82207589	82207722	-
GWHAAZE00000001	exon	82207204	82207404	-
GWHAAZE00000001	CDS	82215650	82215785	-
GWHAAZE00000001	CDS	82215210	82215548	-
GWHAAZE00000001	CDS	82207589	82207722	-
GWHAAZE00000001	CDS	82207204	82207404	-

Transcript Sequence
>GWHTAAZE002586 ATGGGTAATGCTCGGGGACTTGCATTCTACATCTCAATATGCGTGGTTGCTTTCATTATCTCAAAGATCATTATAGCATTCCTCGTCTACTGGCGGTGGCAAAGAAAGCATATGATTGTTCAAGATAGTTTATCAGGTGGGAAGTTGGTGATGTTTAGATCACCAAAAATGAAGTCCCTAAAATCGAATATTTTCTTGAAGAAGACCATGAAATTAAGCAACAAGGACAGAATAGGAGCTGGTGGGTACGGGACGGTTTATAGATTGACTATAAATGAATCAACATCTTTTGCTGTGAAGAGATTGAACAGAGGAAGTGCAGAGCAAGACCGAGGTTTCGAGAGAGAGTTGGAGGCAATGGGGGATATAAAGCATCGAAATATTGTTACCCTTCATGGATATTACACTGCCCCTCACTATAATCTTCTTATTTATGAGCTAATGCCTAATGGATGTTTGGATTCAGTTCTTCATGAATATTTTGATACGGGACGAGCAACAGCTAAAGGGGATGTTTACAGCTTTGGAGTTGTGCTGTTAGAGCTTCTAACGGGTAAAAAACCAAATGATGAAGCTTTTATCGAGGAAGGAACCAAGCTTGTGACATGGGTAAAAGCAGTTGTTCAAGAGAAGAAGGAAGAATATGTACTCGATAGCAGCTTAGAATGTTTTCCTCCTGAAGAAATTAATTATGTGTTTAGTATCGCACAAATGTGCCTTGAGTCGGACCCATCCAAAAGGCCAACCATGGCTGAGGTTGTCAAGATGCTCGAGCAGATTAAATCAAACCATCTTGTGTTAGATTCTTGA

Network for GWHGAAZE002582

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	73	159	7.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIIIa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.721
	SRR3591706	second leaf	0.893
	SRR3591707	mature leaf	0.636
	SRR3591708	Shoot apex	0.417
	SRR3591709	Stem	0.764
	SRR3591710	White floral bud	3.187
	SRR3591711	White flower	9.380
	SRR3591712	Green floral bud	5.054
	SRR3591713	Yellow flower	8.800
SRP173429	SRR8316895	Juvenile bud stage	0.392
	SRR8316896	Juvenile bud stage	0.514
	SRR8316897	Juvenile bud stage	1.494
	SRR8316894	Third green stage	0.393
	SRR8316900	Third green stage	1.117
	SRR8316901	Third green stage	0.366
	SRR8316898	Complete white stage	0.137
	SRR8316899	Complete white stage	0.475
	SRR8316903	Complete white stage	0.151
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.441
	SRR8316905	Silver flowering stage	0.482
	SRR8316906	Gold flowering stage	2.423
	SRR8316907	Gold flowering stage	1.131
	SRR8316908	Gold flowering stage	12.655
SRP132670	SRR6706286	Control	0.296
	SRR6706287	Light intensity 50%	0.506
	SRR6706288	Light intensity 20%	0.296
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.191
	CNS0095593	Slightly white alabastrum(diploid) 2	2.094
	CNS0095594	Slightly white alabastrum(diploid) 3	3.707
	CNS0095595	Whole white alabastrum(diploid) 2	2.397
	CNS0095596	Whole white alabastrum(diploid) 3	1.770
	CNS0095597	Whole white alabastrum(diploid) 4	2.298
	CNS0095598	Silvery flower (diploied) 1	0.545
	CNS0095599	Silvery flower (diploied) 2	0.576
	CNS0095600	Silvery flower (diploied) 3	0.833
	CNS0095601	Golden flower (diploid) 1	0.250
	CNS0095602	Golden flower (diploid) 2	1.118
	CNS0095603	Golden flower (diploid) 3	0.896
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.290
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.104
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.533
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.921
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.325
	CNS0095610	Silvery flower (tetraploid) 1	4.020
	CNS0095611	Silvery flower (tetraploid) 2	2.023
	CNS0095612	Silvery flower (tetraploid) 3	3.142
	CNS0095613	Golden flower (tetraploid) 1	2.494
	CNS0095614	Golden flower (tetraploid) 2	4.813
	CNS0095615	Golden flower (tetraploid) 3	0.594
CRA001975	CRR073297	Stem 1	0.111
	CRR073298	Stem 2	0.445
	CRR073299	Stem 3	0.252
	CRR073300	Leaf 1	0.019
	CRR073301	Leaf 2	0.096
	CRR073302	Leaf 3	0.100
	CRR073303	Juvenile bud 1	0.049
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.266
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.241
	CRR073310	Second white 2	0.329
	CRR073311	Second white 3	0.282
	CRR073312	Silver flowering 1	0.433
	CRR073313	Silver flowering 2	0.095
	CRR073314	Silver flowering 3	0.609
	CRR073315	Gold flowering 1	0.049
	CRR073316	Gold flowering 2	0.733
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.769
	CRR073319	Tawny withering 2	0.243
	CRR073320	Tawny withering 3	0.308