Gene detail

Detail information of GWHGAAZE002565

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098110.1	4.5757E-140	PREDICTED: 2-oxoglutarate-dependent dioxygenase DAO-like [Sesamum indicum]
COG	YP_004572412.1	4E-25	oxidoreductase
Swissprot	tr\|Q7XKU5\|DAO_ORYSJ	1E-79	2-oxoglutarate-dependent dioxygenase DAO
trEMBL	tr\|A0A022QC34\|A0A022QC34_ERYGU	2E-135	Uncharacterized protein {ECO:0000313\|EMBL:EYU26232.1}
TAIR10	AT1G14130.1	2E-75	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81750299	81752092	-
GWHAAZE00000001	mRNA	81750299	81752092	-
GWHAAZE00000001	exon	81751736	81752092	-
GWHAAZE00000001	exon	81750921	81751235	-
GWHAAZE00000001	exon	81750299	81750665	-
GWHAAZE00000001	CDS	81751736	81752092	-
GWHAAZE00000001	CDS	81750921	81751235	-
GWHAAZE00000001	CDS	81750390	81750665	-
GWHAAZE00000001	three_prime_UTR	81750299	81750389	-

Transcript Sequence
>GWHTAAZE002569 ATGGGTGGTGGTTTTCCAATACTAGACATGCAAGATTGTGATGGGCAGCTGGCAGATAAATTGGTAAAAGCATGTGAAGAGTGGGGGTATTTTAGACTTATTAACCATGGGGTGCCATTGAAGCTAATGGCGGAGATGAAGGAGGTGACTAGGGCTCTAATGGACCTTCCATTAGAGACCAAAATGAAGACTGCTCACCCTGTGCATGGTAGAGGGTACATAGCACCTAACTATGCTAGCCCTTTTTTTGAGGGCATGGGTGTTTATGACATGACCTTGCCTGGTGGTGTTGATGAATTTTGTGATCAACTTGGTGCCACTCCTCACCAAAGGTCTCTCTCTCTCTGTCTCTCTAAAGTTATGATCAAGTACTCTCAAGCTCTATACAAAATAAGTCACTACATTGAGAAGAAGTTGGTGGAAGGAATGGGTTTGGAAAAGGATTACTTTAGTGATTGGCCATGTCAGTTTAAATTGAACAAATACAGTTATAGTGATCAAAGCGTGGGAATGACCGGAGCCTTGATGCACTCTGACATAGGATTCCTCACAATTTTACAAGATGATGAAATAATAGGTGGCCTTGAAGCTATTGATGAAAAAAATGGGGAGTTAGTTTCAATTGAACCTATGGAAGGCACCTTTGTGGTCAACGTTGGTGATGTTGCTAAGGTATGGAGCAATGGAAGATTTTGCAATGTGAAACACCGGGTGCAGTGTTATCAAGCAGGGGTTCGAATTTCAGTTGCTTTATTTGTCTTGGGCCCAAGGGATGCGAAAGTTGAAGTGGCACCGGAATTAATAAGCTCAGAAACTCCTAGTCTATATGCACCTTTCGATTTTGAAGAATACAGAATTGTTCGAACTAAAACCAACTCACCCACTGGTGGAGCTCTTGAGCTATTCCGCTCACCAACTCCTGAAAACGGTTGCAACCTATGCGCTTAGAGGATTATGCGACTGAATATTAATGTGAGTTATACTATATATATTTCTACCTTTGAAGAAAACGAAAAATAATGACTTCAATTTGCATGAA

Network for GWHGAAZE002565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	6	76	1.60E-17
PF03171.21	2OG-FeII_Oxy	159	253	6.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23947	DAO	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	13.001
	SRR3591711	White flower	1.872
	SRR3591712	Green floral bud	3.681
	SRR3591713	Yellow flower	0.477
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.053
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	1.200
	SRR8316901	Third green stage	0.565
	SRR8316898	Complete white stage	0.083
	SRR8316899	Complete white stage	0.237
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.123
	SRR8316904	Silver flowering stage	0.161
	SRR8316905	Silver flowering stage	0.235
	SRR8316906	Gold flowering stage	0.357
	SRR8316907	Gold flowering stage	0.007
	SRR8316908	Gold flowering stage	1.333
SRP132670	SRR6706286	Control	1.014
	SRR6706287	Light intensity 50%	1.146
	SRR6706288	Light intensity 20%	0.589
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.073
	CNS0095593	Slightly white alabastrum(diploid) 2	0.095
	CNS0095594	Slightly white alabastrum(diploid) 3	0.180
	CNS0095595	Whole white alabastrum(diploid) 2	2.508
	CNS0095596	Whole white alabastrum(diploid) 3	3.285
	CNS0095597	Whole white alabastrum(diploid) 4	7.738
	CNS0095598	Silvery flower (diploied) 1	1.229
	CNS0095599	Silvery flower (diploied) 2	3.974
	CNS0095600	Silvery flower (diploied) 3	1.406
	CNS0095601	Golden flower (diploid) 1	1.813
	CNS0095602	Golden flower (diploid) 2	1.258
	CNS0095603	Golden flower (diploid) 3	1.651
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.194
	CNS0095610	Silvery flower (tetraploid) 1	0.004
	CNS0095611	Silvery flower (tetraploid) 2	0.557
	CNS0095612	Silvery flower (tetraploid) 3	0.955
	CNS0095613	Golden flower (tetraploid) 1	0.549
	CNS0095614	Golden flower (tetraploid) 2	0.353
	CNS0095615	Golden flower (tetraploid) 3	0.435
CRA001975	CRR073297	Stem 1	0.069
	CRR073298	Stem 2	0.053
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.385
	CRR073301	Leaf 2	0.507
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	3.819
	CRR073304	Juvenile bud 2	2.592
	CRR073305	Juvenile bud 3	0.469
	CRR073306	Third green 1	1.451
	CRR073307	Third green 2	1.589
	CRR073308	Third green 3	1.137
	CRR073309	Second white 1	0.178
	CRR073310	Second white 2	0.576
	CRR073311	Second white 3	0.210
	CRR073312	Silver flowering 1	1.148
	CRR073313	Silver flowering 2	0.718
	CRR073314	Silver flowering 3	1.196
	CRR073315	Gold flowering 1	0.943
	CRR073316	Gold flowering 2	0.233
	CRR073317	Gold flowering 3	0.413
	CRR073318	Tawny withering 1	59.925
	CRR073319	Tawny withering 2	63.762
	CRR073320	Tawny withering 3	26.238