Gene detail

Detail information of GWHGAAZE002561

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010035675.1	0	PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Eucalyptus grandis]
COG	YP_008797747.1	9E-99	tyrosyl-tRNA synthetase
trEMBL	tr\|A0A058ZZ48\|A0A058ZZ48_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW47127.1}
TAIR10	AT2G33840.1	5E-169	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81660375	81673693	-
GWHAAZE00000001	mRNA	81660375	81673693	-
GWHAAZE00000001	exon	81673578	81673693	-
GWHAAZE00000001	exon	81673329	81673479	-
GWHAAZE00000001	exon	81671716	81672005	-
GWHAAZE00000001	exon	81671538	81671634	-
GWHAAZE00000001	exon	81669879	81669984	-
GWHAAZE00000001	exon	81669703	81669785	-
GWHAAZE00000001	exon	81669323	81669468	-
GWHAAZE00000001	exon	81668972	81669077	-
GWHAAZE00000001	exon	81668244	81668303	-
GWHAAZE00000001	exon	81664825	81665114	-
GWHAAZE00000001	exon	81660375	81660558	-
GWHAAZE00000001	CDS	81673578	81673693	-
GWHAAZE00000001	CDS	81673329	81673479	-
GWHAAZE00000001	CDS	81671716	81672005	-
GWHAAZE00000001	CDS	81671538	81671634	-
GWHAAZE00000001	CDS	81669879	81669984	-
GWHAAZE00000001	CDS	81669703	81669785	-
GWHAAZE00000001	CDS	81669323	81669468	-
GWHAAZE00000001	CDS	81668972	81669077	-
GWHAAZE00000001	CDS	81668244	81668303	-
GWHAAZE00000001	CDS	81664825	81665114	-
GWHAAZE00000001	CDS	81660375	81660558	-

Transcript Sequence
>GWHTAAZE002565 ATGGCTACCCCTCCGTCCAAGGACACGGAGACCCCACCCACTAACGAGGTAGAAACCCTATCAATTACGCCGCAAGATCAATCTTCCTCTTCCGGCCCCTCCATTTCCACTGCCCAGATGATGAGTGTAGAGGAAAGATTCAGGATTGTGAGGAGTGTAGGGGAGGAATGTATCCAAGAGGATGAGTTGATGAATCTTCTTGCAAAGAAGCCCCAACCCATTTGTTACGATGGGTTCGAACCCTCCGGTCGAATGCACATTGCTCAGGGTGTTATGAAGACAATTAACGTCAACAAACTTACATCCGCTGGTTGTAAAGTAAAGATTTGGATTGCAGATTGGTTTGCACAATTAAACAATAAAATGGGTGGGGATTTGAAAAAAATTCAGACAGTTGGACGCTATTTGATCGAGATATGGAAAGCCGTGGGGATGAATCTGGATGATGGTCAAGTGGAGTTTTTGTGGTCTTCCGATGAAATCAATTCTCGGGCCCACGAATACTGGCCTTTGGTAATGGACATAGCTCGAAGGAACAAGCTTCCTAGGATATTGAGGTGTGTTCAGATTATGGGTCGCAATGAGCAGGATGAGTTGACAGCAGCCCAGATTTTCTACCCGTGCATGCAATGCGCCGATATATTCTTCCTTAAGGCGGACATATGTCAATTGGGCATGGATCAGAGGAAGGTGAATGTACTTGCCAGAGAGTACTGTGATGACATCAAGAGGAAAAACAAGCCTATCATATTGTCTCACCATATGCTTCCTGGTCTGCAGCAAGGGCAAGAGAAGATGTCAAAATCCGATCCATCATCTTCCATCTTTATGGAGGATGAGGAGGCAGAGGTAAATTTGAAGATAAAGAAGGCGTACTGCCCTCCACAGATTGTTGATGGGAATCCATGTATGGATTATGTAAAATTCCTTATATTCCCTTGGTTTAATGAGTTCAAAGTTGAACGAGATGCAAACAATGGTGGTGAAAAGACTTTCACCAGTTTTGAAGAACTAATAGCTGACTATGAAAGTGGGAAATTGCATCCTGCTGACCTGAAGCCTGCTATATCGAAATCGCTAAATAAGATACTTCAGCCTGTTCGCGATCATTTTAAAAATGATCCTACTGCAAAGGAGCTACTGAAACGGGTCAAGGAAATTATGAAAATAAATAATGTGAATAAACTGACATCTGCTGGTTGTAAAGTGAAGATTTGGATTGCAGATTGGTTTGCACAGCTAAACAACAAAATGGGGGGAGACATAAATAAAATCCAAACACTTGGTTGGTACTTTATTGAGATATGGAAGTCTGCCGGGATGAATCTTGAAGGAAGTCAGGTAAAGTTTTTGTGGTCTTCTGAAGAAATCAATTCTCGGCCCCAAGAGTATTGGCCTTTGGTTATGGACATAGCTGGAAGGAATAGTCTTCCACGGATAAAAAGTCATAATTATGATGTCACATGTGATGGATGTGAACAGGAAGATGTAAATGCAAAGATAAAGAATGCGTCGCCTTCAAAGACTGTTGAAGGGAATCCATTCATGGAGTACATCAAATATATAATATTCCCTTGGTTTCACAAGTTCTTGAGGTCGAATGCAAAAAAAAAGGGCGGTGAAAGGTGA

Network for GWHGAAZE002561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00579.26	tRNA-synt_1b	71	365	1.90E-63
PF00579.26	tRNA-synt_1b	386	483	6.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01866	YARS, tyrS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0004831	molecular_function	tyrosine-tRNA ligase activity
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.962
	SRR3591706	second leaf	24.051
	SRR3591707	mature leaf	18.093
	SRR3591708	Shoot apex	51.334
	SRR3591709	Stem	32.490
	SRR3591710	White floral bud	25.588
	SRR3591711	White flower	36.780
	SRR3591712	Green floral bud	47.509
	SRR3591713	Yellow flower	26.898
SRP173429	SRR8316895	Juvenile bud stage	35.370
	SRR8316896	Juvenile bud stage	51.367
	SRR8316897	Juvenile bud stage	27.449
	SRR8316894	Third green stage	21.056
	SRR8316900	Third green stage	60.220
	SRR8316901	Third green stage	52.913
	SRR8316898	Complete white stage	11.649
	SRR8316899	Complete white stage	52.074
	SRR8316903	Complete white stage	17.719
	SRR8316902	Silver flowering stage	10.967
	SRR8316904	Silver flowering stage	14.440
	SRR8316905	Silver flowering stage	7.200
	SRR8316906	Gold flowering stage	26.691
	SRR8316907	Gold flowering stage	23.381
	SRR8316908	Gold flowering stage	27.844
SRP132670	SRR6706286	Control	51.536
	SRR6706287	Light intensity 50%	47.967
	SRR6706288	Light intensity 20%	54.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.247
	CNS0095593	Slightly white alabastrum(diploid) 2	50.936
	CNS0095594	Slightly white alabastrum(diploid) 3	40.256
	CNS0095595	Whole white alabastrum(diploid) 2	42.712
	CNS0095596	Whole white alabastrum(diploid) 3	44.690
	CNS0095597	Whole white alabastrum(diploid) 4	30.625
	CNS0095598	Silvery flower (diploied) 1	35.178
	CNS0095599	Silvery flower (diploied) 2	32.261
	CNS0095600	Silvery flower (diploied) 3	34.542
	CNS0095601	Golden flower (diploid) 1	30.672
	CNS0095602	Golden flower (diploid) 2	32.850
	CNS0095603	Golden flower (diploid) 3	32.872
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.348
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.812
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.110
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.173
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.765
	CNS0095610	Silvery flower (tetraploid) 1	36.610
	CNS0095611	Silvery flower (tetraploid) 2	36.082
	CNS0095612	Silvery flower (tetraploid) 3	23.453
	CNS0095613	Golden flower (tetraploid) 1	19.411
	CNS0095614	Golden flower (tetraploid) 2	33.387
	CNS0095615	Golden flower (tetraploid) 3	20.876
CRA001975	CRR073297	Stem 1	47.931
	CRR073298	Stem 2	43.665
	CRR073299	Stem 3	40.912
	CRR073300	Leaf 1	45.869
	CRR073301	Leaf 2	46.150
	CRR073302	Leaf 3	52.116
	CRR073303	Juvenile bud 1	43.422
	CRR073304	Juvenile bud 2	29.234
	CRR073305	Juvenile bud 3	36.110
	CRR073306	Third green 1	5.436
	CRR073307	Third green 2	5.242
	CRR073308	Third green 3	8.387
	CRR073309	Second white 1	9.007
	CRR073310	Second white 2	8.022
	CRR073311	Second white 3	6.619
	CRR073312	Silver flowering 1	5.920
	CRR073313	Silver flowering 2	5.303
	CRR073314	Silver flowering 3	6.185
	CRR073315	Gold flowering 1	18.229
	CRR073316	Gold flowering 2	22.365
	CRR073317	Gold flowering 3	11.130
	CRR073318	Tawny withering 1	28.202
	CRR073319	Tawny withering 2	25.156
	CRR073320	Tawny withering 3	28.941