Gene detail

Detail information of GWHGAAZE002553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010100570.1	1.73434E-86	Polyphenol oxidase [Morus notabilis]
Swissprot	tr\|P43309\|PPO_MALDO	5E-80	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|W9S222\|W9S222_9ROSA	6E-87	Polyphenol oxidase {ECO:0000313\|EMBL:EXB82813.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	81263402	81264277	+
GWHAAZE00000001	mRNA	81263402	81264277	+
GWHAAZE00000001	exon	81263402	81263798	+
GWHAAZE00000001	exon	81263841	81264277	+
GWHAAZE00000001	CDS	81263402	81263798	+
GWHAAZE00000001	CDS	81263841	81264277	+

Transcript Sequence
>GWHTAAZE002557 ATGTACGAAAATTCCCACACCGGGAACGGCATTTTCGGAGGTGAAATCCGTGGAGGGGAAGACCCGATAAGTGAAGGTGGGTCCATCGAGAATCCGCACAATCTGGTGCATAGTTGGGTGGGTGACCCTACCCAGCCTTATAACGAGAACATGGGCAACTTCTACTCGGCAGCTAAAGATCCCATTTTCTACGGTCACCATGGCAATGTGGATCGCCTGTGGAGCCTCTGGAAGGATATTGACAGTAAAAACACGGACCCCACGTACGATGACTGGAGAAATTCATCTTTCCTCTTTTACGACGAGAATAAAAAGCTCGTACGTGTTTATGTGAAAGACTGTGTGGATTCTAAAATGCTTGGCTACACGTACGAAGAAGTAGATATTCTTTGGAAGGGGTCCACGTTTACAGGGACGACGAAGGCGGTTGTCTTCCCTGTAACACTGGACAAAGAAGTGATGGTTGTAGTGCAAAGGCCGACAAAGTCGAGGACCAAAGAAGAAAAAGAAAATACACCCGAGGTACTCGTGTTAGAAGGGATAGAATACAGTATGGAGAAATTTGTTAAGTTTGATGTTTACATTAACGATGAAGACGAAAATGGACATGCTGCTCCGAGTAACACGGAGTACTTGGGGAGCTTCACAAGCTTGCCACATCGTGGCAAGCATGCAATGAAGGGTATGGCTAGGCTGGTGTTAGGGTTAACAGCGGCACTTGAGGGCTTGGAAGCTGATAATGATGATACTGTGGTGGTCACACTGGTGCCTAGGGCTGGGAGTGAGGATGTCAAAGTTGGTTCCATCAATATTAAGTTTGCTTCCAGAAAGTAG

Network for GWHGAAZE002553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	24	79	2.50E-17
PF12142.9	PPO1_DWL	88	132	1.10E-16
PF12143.9	PPO1_KFDV	145	273	2.30E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004097	molecular_function	catechol oxidase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.044
	SRR3591706	second leaf	817.873
	SRR3591707	mature leaf	64.266
	SRR3591708	Shoot apex	265.830
	SRR3591709	Stem	5.393
	SRR3591710	White floral bud	169.283
	SRR3591711	White flower	112.668
	SRR3591712	Green floral bud	435.950
	SRR3591713	Yellow flower	15.318
SRP173429	SRR8316895	Juvenile bud stage	54.474
	SRR8316896	Juvenile bud stage	49.776
	SRR8316897	Juvenile bud stage	84.546
	SRR8316894	Third green stage	33.712
	SRR8316900	Third green stage	180.488
	SRR8316901	Third green stage	167.496
	SRR8316898	Complete white stage	25.148
	SRR8316899	Complete white stage	90.221
	SRR8316903	Complete white stage	31.505
	SRR8316902	Silver flowering stage	16.362
	SRR8316904	Silver flowering stage	16.865
	SRR8316905	Silver flowering stage	10.221
	SRR8316906	Gold flowering stage	10.642
	SRR8316907	Gold flowering stage	22.956
	SRR8316908	Gold flowering stage	28.930
SRP132670	SRR6706286	Control	165.086
	SRR6706287	Light intensity 50%	168.008
	SRR6706288	Light intensity 20%	202.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.444
	CNS0095593	Slightly white alabastrum(diploid) 2	44.752
	CNS0095594	Slightly white alabastrum(diploid) 3	56.917
	CNS0095595	Whole white alabastrum(diploid) 2	36.609
	CNS0095596	Whole white alabastrum(diploid) 3	29.083
	CNS0095597	Whole white alabastrum(diploid) 4	35.905
	CNS0095598	Silvery flower (diploied) 1	18.923
	CNS0095599	Silvery flower (diploied) 2	8.110
	CNS0095600	Silvery flower (diploied) 3	23.620
	CNS0095601	Golden flower (diploid) 1	3.097
	CNS0095602	Golden flower (diploid) 2	5.557
	CNS0095603	Golden flower (diploid) 3	6.515
	CNS0095604	Slightly white alabastrum(tetraploid) 1	98.428
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	306.644
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.105
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.645
	CNS0095609	Whole white alabastrum(tetraploid) 3	171.489
	CNS0095610	Silvery flower (tetraploid) 1	43.686
	CNS0095611	Silvery flower (tetraploid) 2	38.195
	CNS0095612	Silvery flower (tetraploid) 3	23.112
	CNS0095613	Golden flower (tetraploid) 1	3.760
	CNS0095614	Golden flower (tetraploid) 2	4.568
	CNS0095615	Golden flower (tetraploid) 3	22.208
CRA001975	CRR073297	Stem 1	185.639
	CRR073298	Stem 2	207.845
	CRR073299	Stem 3	239.892
	CRR073300	Leaf 1	306.748
	CRR073301	Leaf 2	245.624
	CRR073302	Leaf 3	256.392
	CRR073303	Juvenile bud 1	210.446
	CRR073304	Juvenile bud 2	172.065
	CRR073305	Juvenile bud 3	256.077
	CRR073306	Third green 1	24.863
	CRR073307	Third green 2	6.286
	CRR073308	Third green 3	24.579
	CRR073309	Second white 1	10.259
	CRR073310	Second white 2	3.238
	CRR073311	Second white 3	3.410
	CRR073312	Silver flowering 1	0.103
	CRR073313	Silver flowering 2	0.198
	CRR073314	Silver flowering 3	0.623
	CRR073315	Gold flowering 1	3.101
	CRR073316	Gold flowering 2	7.563
	CRR073317	Gold flowering 3	36.809
	CRR073318	Tawny withering 1	0.061
	CRR073319	Tawny withering 2	0.452
	CRR073320	Tawny withering 3	0.442