Detail information of GWHGAAZE002550


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007025702.10Uncharacterized protein TCM_029922 [Theobroma cacao]
Swissprottr|P43309|PPO_MALDO0Polyphenol oxidase, chloroplastic (Precursor)
trEMBLtr|A0A061GMJ6|A0A061GMJ6_THECC0Uncharacterized protein {ECO:0000313|EMBL:EOY28324.1}

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8109599181097772+
GWHAAZE00000001mRNA8109599181097772+
GWHAAZE00000001exon8109599181097284+
GWHAAZE00000001exon8109731881097772+
GWHAAZE00000001CDS8109599181097284+
GWHAAZE00000001CDS8109731881097772+
Transcript Sequence

Network for GWHGAAZE002550

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00264.21Tyrosinase1743801.70E-32
PF12142.9PPO1_DWL3874367.80E-23
PF12143.9PPO1_KFDV4495782.80E-48
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00422E1.10.3.1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Tyrosine metabolismmap00350
Isoquinoline alkaloid biosynthesismap00950

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0046148biological_processpigment biosynthetic process
GO:0004097molecular_functioncatechol oxidase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002550.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.000
SRR3591706second leaf0.093
SRR3591707mature leaf0.135
SRR3591708Shoot apex2.654
SRR3591709Stem3.436
SRR3591710White floral bud15.452
SRR3591711White flower56.344
SRR3591712Green floral bud2.471
SRR3591713Yellow flower0.217
SRP173429 SRR8316895Juvenile bud stage 0.117
SRR8316896Juvenile bud stage 1.512
SRR8316897Juvenile bud stage 0.345
SRR8316894Third green stage 0.392
SRR8316900Third green stage 3.080
SRR8316901Third green stage 3.597
SRR8316898Complete white stage 11.508
SRR8316899Complete white stage 7.329
SRR8316903Complete white stage 11.457
SRR8316902Silver flowering stage0.088
SRR8316904Silver flowering stage2.709
SRR8316905Silver flowering stage0.910
SRR8316906Gold flowering stage 0.825
SRR8316907Gold flowering stage 2.283
SRR8316908Gold flowering stage 4.348
SRP132670SRR6706286Control1.433
SRR6706287Light intensity 50%1.852
SRR6706288Light intensity 20%1.110
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.708
CNS0095593Slightly white alabastrum(diploid) 21.032
CNS0095594Slightly white alabastrum(diploid) 30.870
CNS0095595Whole white alabastrum(diploid) 20.292
CNS0095596Whole white alabastrum(diploid) 30.728
CNS0095597Whole white alabastrum(diploid) 40.470
CNS0095598Silvery flower (diploied) 11.646
CNS0095599Silvery flower (diploied) 20.969
CNS0095600Silvery flower (diploied) 30.278
CNS0095601Golden flower (diploid) 16.192
CNS0095602Golden flower (diploid) 20.790
CNS0095603Golden flower (diploid) 31.130
CNS0095604Slightly white alabastrum(tetraploid) 14.937
CNS0095605Slightly white alabastrum(tetraploid) 22.840
CNS0095606Slightly white alabastrum(tetraploid) 36.004
CNS0095607Whole white alabastrum(tetraploid) 11.263
CNS0095608Whole white alabastrum(tetraploid) 24.794
CNS0095609Whole white alabastrum(tetraploid) 310.293
CNS0095610Silvery flower (tetraploid) 10.590
CNS0095611Silvery flower (tetraploid) 20.151
CNS0095612Silvery flower (tetraploid) 30.681
CNS0095613Golden flower (tetraploid) 10.027
CNS0095614Golden flower (tetraploid) 20.163
CNS0095615Golden flower (tetraploid) 30.055
CRA001975CRR073297Stem 10.781
CRR073298Stem 21.001
CRR073299Stem 32.574
CRR073300Leaf 12.495
CRR073301Leaf 22.737
CRR073302Leaf 33.850
CRR073303Juvenile bud 19.817
CRR073304Juvenile bud 230.760
CRR073305Juvenile bud 36.165
CRR073306Third green 16.755
CRR073307Third green 29.950
CRR073308Third green 34.425
CRR073309Second white 12.902
CRR073310Second white 20.485
CRR073311Second white 30.353
CRR073312Silver flowering 11.327
CRR073313Silver flowering 21.972
CRR073314Silver flowering 30.856
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.218
CRR073318Tawny withering 16.091
CRR073319Tawny withering 227.750
CRR073320Tawny withering 32.820