Gene detail

Detail information of GWHGAAZE002523

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009626865.1	0	PREDICTED: serine/threonine-protein kinase WAG1-like [Nicotiana tomentosiformis]
COG	YP_827085.1	2E-25	serine/threonine protein kinase
Swissprot	tr\|Q9C8M5\|WAG1_ARATH	0	Serine/threonine-protein kinase WAG1
trEMBL	tr\|M1D2J0\|M1D2J0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400079838}
TAIR10	AT1G53700.1	6E-135	WAG 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80556672	80562446	+
GWHAAZE00000001	mRNA	80556672	80562446	+
GWHAAZE00000001	exon	80556672	80556685	+
GWHAAZE00000001	exon	80560814	80561440	+
GWHAAZE00000001	exon	80561831	80562446	+
GWHAAZE00000001	CDS	80556672	80556685	+
GWHAAZE00000001	CDS	80560814	80561440	+
GWHAAZE00000001	CDS	80561831	80562446	+

Transcript Sequence
>GWHTAAZE002527 ATGGAACTTGTTTCCCTTACCCTCAGCTTCAACGATCCCTCCCGCCACTCCACCAGTACCTCCCCTTCCCTCCACCACCGCCGTTCCGACCCCCACTGGTCAGCCATCACGCTCTCCACCACCCTCTCCACAGACCAAATCCTTCACCTCCACCACCTCAAGCTCCTCCGCCACCTCGGCTCCGGAAACCTCGGCCGCGTCTTTCTCTGCCGCCTCCGGCACGACCACCACCTCAACTTCGCCCTCAAAGTCGTCGACACCCGATCTCTCTCCTCCAAAAAACTCTCTCATATCGAAACGGAGGCCCGGATCCTCTCCTCTCTCGACCACCCTTTCCTCCCTACACTCTACGCTCACCTCCAAGTCTCTCACTACAGTTGCCTTCTCATTGATTACTGCCCCAACGGTGACCTCCACTCCCTCCTTCGCCAACAGCCCCGATACAGGCTACCTGTCTCTGCGGTCAGATTCTTCGCTGCCGAAGTGCTTGTAGCTCTCGAGTATCTTCACGCACTCGGCGTTGTTTACAGAGACCTCAAGCCTGAGAATATACTGATCCGAGAAGATGGTCACATTATGCTGTCAGATTTCGATTTGTGTTTCAATGCCGAAATCGTGCCCAAATTGGAAACTAATGTTCAAGTAGGGTCCACTGAAACAGTTACGGAGTTCGTCGCAGAGCCGACTGCAGCATTTTCAAGATCTTGCGTTGGGACCCACGAGTACTTGGCACCAGAGATAGTCGCCGGGAACGGCCATGGCAACGGTGTCGACTGGTGGGCGTTTGGGGTTTTAATATACGAGTTGCTGTACGGTACGACGCCGTTTAAGGGTGAGAGTAAAGAGTCCACCCTGCGCAATATAGCGTCGACCAGAGGGGTGAGGTTTGAGGGAGGAGTGGAGGAAGAGGGGATTGGTGAAGCCAAAGATTTAATTGAGAGGTTGTTGGTTAAGGATCCAAGGAAGAGGCTAGGGTGCGCCAGGGGTGCACAGGATATTAAGCGACACCCGTTTTTCAACGGAGTTAAGTGGCCATTGATACGGAATTACCGGCCACCGGAGGTGCGTGGGATTGTTGTGAGGAAGAGTAAGTCGCACGTTAGTCACGTGAGTGGTATGTTATCCCACAAGAGAAGGCGATGGTGGAGGAAGGGTATTAATTGTATTATGACCAAAAGTAAGGGGTCTAAACGTAATTTAAATTCCAACCACAACTATTATTGTTACACAAATGATAGCGGTAGGAAATGTGATTGA

Network for GWHGAAZE002523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	55	339	7.50E-58

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.807
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.128
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	1.512
	SRR3591710	White floral bud	11.068
	SRR3591711	White flower	1.061
	SRR3591712	Green floral bud	22.293
	SRR3591713	Yellow flower	0.700
SRP173429	SRR8316895	Juvenile bud stage	0.956
	SRR8316896	Juvenile bud stage	1.636
	SRR8316897	Juvenile bud stage	0.649
	SRR8316894	Third green stage	1.858
	SRR8316900	Third green stage	6.727
	SRR8316901	Third green stage	5.285
	SRR8316898	Complete white stage	4.565
	SRR8316899	Complete white stage	13.118
	SRR8316903	Complete white stage	9.740
	SRR8316902	Silver flowering stage	3.211
	SRR8316904	Silver flowering stage	2.366
	SRR8316905	Silver flowering stage	2.107
	SRR8316906	Gold flowering stage	1.760
	SRR8316907	Gold flowering stage	0.962
	SRR8316908	Gold flowering stage	2.664
SRP132670	SRR6706286	Control	9.541
	SRR6706287	Light intensity 50%	11.339
	SRR6706288	Light intensity 20%	12.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.693
	CNS0095593	Slightly white alabastrum(diploid) 2	3.585
	CNS0095594	Slightly white alabastrum(diploid) 3	1.776
	CNS0095595	Whole white alabastrum(diploid) 2	5.419
	CNS0095596	Whole white alabastrum(diploid) 3	5.420
	CNS0095597	Whole white alabastrum(diploid) 4	5.305
	CNS0095598	Silvery flower (diploied) 1	3.052
	CNS0095599	Silvery flower (diploied) 2	1.122
	CNS0095600	Silvery flower (diploied) 3	2.633
	CNS0095601	Golden flower (diploid) 1	0.818
	CNS0095602	Golden flower (diploid) 2	2.505
	CNS0095603	Golden flower (diploid) 3	1.504
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.427
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.960
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.839
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.974
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.011
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.242
	CNS0095610	Silvery flower (tetraploid) 1	1.330
	CNS0095611	Silvery flower (tetraploid) 2	1.784
	CNS0095612	Silvery flower (tetraploid) 3	1.763
	CNS0095613	Golden flower (tetraploid) 1	0.751
	CNS0095614	Golden flower (tetraploid) 2	0.608
	CNS0095615	Golden flower (tetraploid) 3	2.046
CRA001975	CRR073297	Stem 1	11.800
	CRR073298	Stem 2	12.466
	CRR073299	Stem 3	7.951
	CRR073300	Leaf 1	28.183
	CRR073301	Leaf 2	23.442
	CRR073302	Leaf 3	18.771
	CRR073303	Juvenile bud 1	18.792
	CRR073304	Juvenile bud 2	6.971
	CRR073305	Juvenile bud 3	32.469
	CRR073306	Third green 1	8.084
	CRR073307	Third green 2	11.473
	CRR073308	Third green 3	8.205
	CRR073309	Second white 1	1.795
	CRR073310	Second white 2	0.976
	CRR073311	Second white 3	1.053
	CRR073312	Silver flowering 1	0.234
	CRR073313	Silver flowering 2	0.340
	CRR073314	Silver flowering 3	0.946
	CRR073315	Gold flowering 1	0.944
	CRR073316	Gold flowering 2	1.085
	CRR073317	Gold flowering 3	0.310
	CRR073318	Tawny withering 1	1.354
	CRR073319	Tawny withering 2	0.035
	CRR073320	Tawny withering 3	1.960