Detail information of GWHGAAZE002500


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009598594.13.0552E-135PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana tomentosiformis]
COGNP_967340.19E-10RNA-binding protein
Swissprottr|Q8W034|RNP1_ARATH7E-47Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|M5XCJ4|M5XCJ4_PRUPE1E-134Uncharacterized protein {ECO:0000313|EMBL:EMJ16810.1}
TAIR10AT3G13224.25E-79RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7994372779949574-
GWHAAZE00000001mRNA7994372779949574-
GWHAAZE00000001exon7994953479949574-
GWHAAZE00000001exon7994896479949004-
GWHAAZE00000001exon7994866279948825-
GWHAAZE00000001exon7994480679944905-
GWHAAZE00000001exon7994451479944683-
GWHAAZE00000001exon7994372779944266-
GWHAAZE00000001CDS7994953479949574-
GWHAAZE00000001CDS7994896479949004-
GWHAAZE00000001CDS7994866279948825-
GWHAAZE00000001CDS7994480679944905-
GWHAAZE00000001CDS7994451479944683-
GWHAAZE00000001CDS7994372779944266-
Transcript Sequence

Network for GWHGAAZE002500

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_116748.40E-13
PF00076.23RRM_11041602.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.041
SRR3591706second leaf22.582
SRR3591707mature leaf21.686
SRR3591708Shoot apex55.141
SRR3591709Stem35.516
SRR3591710White floral bud40.164
SRR3591711White flower55.060
SRR3591712Green floral bud45.487
SRR3591713Yellow flower42.363
SRP173429 SRR8316895Juvenile bud stage 32.735
SRR8316896Juvenile bud stage 37.868
SRR8316897Juvenile bud stage 20.063
SRR8316894Third green stage 14.948
SRR8316900Third green stage 41.210
SRR8316901Third green stage 43.445
SRR8316898Complete white stage 15.772
SRR8316899Complete white stage 51.413
SRR8316903Complete white stage 26.683
SRR8316902Silver flowering stage18.668
SRR8316904Silver flowering stage25.207
SRR8316905Silver flowering stage10.836
SRR8316906Gold flowering stage 37.285
SRR8316907Gold flowering stage 40.217
SRR8316908Gold flowering stage 40.775
SRP132670SRR6706286Control53.111
SRR6706287Light intensity 50%51.297
SRR6706288Light intensity 20%56.376
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.229
CNS0095593Slightly white alabastrum(diploid) 242.490
CNS0095594Slightly white alabastrum(diploid) 333.438
CNS0095595Whole white alabastrum(diploid) 230.053
CNS0095596Whole white alabastrum(diploid) 325.477
CNS0095597Whole white alabastrum(diploid) 422.796
CNS0095598Silvery flower (diploied) 141.955
CNS0095599Silvery flower (diploied) 235.769
CNS0095600Silvery flower (diploied) 344.226
CNS0095601Golden flower (diploid) 135.220
CNS0095602Golden flower (diploid) 248.234
CNS0095603Golden flower (diploid) 341.927
CNS0095604Slightly white alabastrum(tetraploid) 139.546
CNS0095605Slightly white alabastrum(tetraploid) 235.663
CNS0095606Slightly white alabastrum(tetraploid) 382.525
CNS0095607Whole white alabastrum(tetraploid) 121.505
CNS0095608Whole white alabastrum(tetraploid) 219.316
CNS0095609Whole white alabastrum(tetraploid) 347.793
CNS0095610Silvery flower (tetraploid) 149.382
CNS0095611Silvery flower (tetraploid) 242.461
CNS0095612Silvery flower (tetraploid) 335.745
CNS0095613Golden flower (tetraploid) 134.788
CNS0095614Golden flower (tetraploid) 250.436
CNS0095615Golden flower (tetraploid) 337.032
CRA001975CRR073297Stem 131.237
CRR073298Stem 227.646
CRR073299Stem 335.991
CRR073300Leaf 128.542
CRR073301Leaf 224.399
CRR073302Leaf 329.919
CRR073303Juvenile bud 123.662
CRR073304Juvenile bud 219.947
CRR073305Juvenile bud 330.981
CRR073306Third green 111.820
CRR073307Third green 210.491
CRR073308Third green 315.634
CRR073309Second white 114.671
CRR073310Second white 216.194
CRR073311Second white 313.079
CRR073312Silver flowering 116.377
CRR073313Silver flowering 218.034
CRR073314Silver flowering 317.730
CRR073315Gold flowering 114.286
CRR073316Gold flowering 217.102
CRR073317Gold flowering 320.864
CRR073318Tawny withering 118.559
CRR073319Tawny withering 223.762
CRR073320Tawny withering 322.420