Gene detail

Detail information of GWHGAAZE002484

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003634760.1	5.5426E-91	PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
Swissprot	tr\|O23310\|NFYB3_ARATH	2E-75	Nuclear transcription factor Y subunit B-3
trEMBL	tr\|D7UAG5\|D7UAG5_VITVI	2E-91	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39730.3}
TAIR10	AT4G14540.1	3E-58	nuclear factor Y, subunit B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79666477	79667473	+
GWHAAZE00000001	mRNA	79666477	79667473	+
GWHAAZE00000001	exon	79666477	79666729	+
GWHAAZE00000001	exon	79666898	79667473	+
GWHAAZE00000001	five_prime_UTR	79666477	79666666	+
GWHAAZE00000001	CDS	79666667	79666729	+
GWHAAZE00000001	CDS	79666898	79667473	+

Transcript Sequence
>GWHTAAZE002488 CGGAAACAGTTTCCCGATAACCACTCTCTCTCCCGCCAAAATAATTGAAAGAAATGAAAGCAATTCTTGTGCAGGTCGGTTAGTCAATTGTTGATAACAATCTCTTTTCAAGAAAGTCCTGAGTTTCGTAGCTAAAGTCTAATACGTTGACAACTAACTGTAATTGTTCTTACTTGAGTTCTAATCAACTATGGCGGATTCTGATAACGAATCGGGAGGACATGGGAACAGCGAGCTGTCGGCGAGAGAGCAGGACAGGTTCCTGCCGATAGCTAACGTGAGCCGGATCATGAAGAAGGCCTTACCAGCAAACGCGAAGATCTCCAAGGACGCGAAGGAGACAGTTCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACGGGCGAGGCATCGGACAAGTGCCAGAGGGAGAAGCGCAAGACGATCAACGGCGACGATCTACTCTGGGCCATGACGACTTTAGGGTTTGAGGATTATGTGGAGCCTTTGAAGGTTTATCTTGCCAAGTACAGGGAGATTGAGGGGGAGAAGACCGCGATTGGAGGTCAGAAGGATGGATCCGGCAGTGGTGGTGGTGGTGCAGCTGAAGGCTCCGCCGGTGGATACAATGGTGGTGGGATGTATGGGGGCATGCAGGGTGGTATGATGATGATGGGGGCCCAACACCACCACCACCATCATAATCAGGGACAGGTGTACGGCTCCGGGCCTTTTCATCAAATGGGAATGGGCGGGGCCAGTAGGGGTGGGGTAGTCGGGAAGGGCAGTACGGGCAATTCAGGTAGCATTGGTGGAGGTGGTGGAGGTTCCACTATGAGGCCAAGGTAG

Network for GWHGAAZE002484

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00808.24	CBFD_NFYB_HMF	24	88	2.10E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	pathway	mapID
K08065	NFYB, HAP3	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0046982	molecular_function	protein heterodimerization activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.074
	SRR3591706	second leaf	47.310
	SRR3591707	mature leaf	44.621
	SRR3591708	Shoot apex	89.467
	SRR3591709	Stem	40.848
	SRR3591710	White floral bud	8.755
	SRR3591711	White flower	19.933
	SRR3591712	Green floral bud	4.990
	SRR3591713	Yellow flower	8.004
SRP173429	SRR8316895	Juvenile bud stage	4.708
	SRR8316896	Juvenile bud stage	6.364
	SRR8316897	Juvenile bud stage	2.327
	SRR8316894	Third green stage	1.141
	SRR8316900	Third green stage	2.292
	SRR8316901	Third green stage	3.828
	SRR8316898	Complete white stage	2.997
	SRR8316899	Complete white stage	5.463
	SRR8316903	Complete white stage	5.702
	SRR8316902	Silver flowering stage	4.702
	SRR8316904	Silver flowering stage	5.582
	SRR8316905	Silver flowering stage	3.684
	SRR8316906	Gold flowering stage	10.809
	SRR8316907	Gold flowering stage	7.391
	SRR8316908	Gold flowering stage	8.262
SRP132670	SRR6706286	Control	6.477
	SRR6706287	Light intensity 50%	4.256
	SRR6706288	Light intensity 20%	2.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.520
	CNS0095593	Slightly white alabastrum(diploid) 2	3.229
	CNS0095594	Slightly white alabastrum(diploid) 3	1.855
	CNS0095595	Whole white alabastrum(diploid) 2	2.764
	CNS0095596	Whole white alabastrum(diploid) 3	1.361
	CNS0095597	Whole white alabastrum(diploid) 4	2.676
	CNS0095598	Silvery flower (diploied) 1	19.851
	CNS0095599	Silvery flower (diploied) 2	10.365
	CNS0095600	Silvery flower (diploied) 3	12.753
	CNS0095601	Golden flower (diploid) 1	22.182
	CNS0095602	Golden flower (diploid) 2	19.212
	CNS0095603	Golden flower (diploid) 3	20.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.119
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.689
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.257
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.200
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.851
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.009
	CNS0095610	Silvery flower (tetraploid) 1	20.057
	CNS0095611	Silvery flower (tetraploid) 2	17.682
	CNS0095612	Silvery flower (tetraploid) 3	5.903
	CNS0095613	Golden flower (tetraploid) 1	19.016
	CNS0095614	Golden flower (tetraploid) 2	26.403
	CNS0095615	Golden flower (tetraploid) 3	13.412
CRA001975	CRR073297	Stem 1	12.685
	CRR073298	Stem 2	11.309
	CRR073299	Stem 3	15.171
	CRR073300	Leaf 1	5.907
	CRR073301	Leaf 2	7.219
	CRR073302	Leaf 3	6.074
	CRR073303	Juvenile bud 1	3.299
	CRR073304	Juvenile bud 2	2.973
	CRR073305	Juvenile bud 3	5.746
	CRR073306	Third green 1	7.838
	CRR073307	Third green 2	8.305
	CRR073308	Third green 3	9.188
	CRR073309	Second white 1	4.572
	CRR073310	Second white 2	4.226
	CRR073311	Second white 3	2.424
	CRR073312	Silver flowering 1	2.332
	CRR073313	Silver flowering 2	2.882
	CRR073314	Silver flowering 3	1.025
	CRR073315	Gold flowering 1	58.224
	CRR073316	Gold flowering 2	58.566
	CRR073317	Gold flowering 3	65.529
	CRR073318	Tawny withering 1	48.316
	CRR073319	Tawny withering 2	25.635
	CRR073320	Tawny withering 3	41.060