Gene detail

Detail information of GWHGAAZE002482

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006357642.1	1.8831E-128	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Solanum tuberosum]
Swissprot	tr\|Q9SCY5\|KINB2_ARATH	1E-96	SNF1-related protein kinase regulatory subunit beta-2
trEMBL	tr\|K4CEV2\|K4CEV2_SOLLC	1E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g045460.2.1}
TAIR10	AT4G16360.3	3E-69	5'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79623016	79627446	-
GWHAAZE00000001	mRNA	79623016	79627446	-
GWHAAZE00000001	exon	79623016	79623339	-
GWHAAZE00000001	exon	79625576	79625738	-
GWHAAZE00000001	exon	79625834	79626006	-
GWHAAZE00000001	exon	79626878	79627071	-
GWHAAZE00000001	exon	79627443	79627446	-
GWHAAZE00000001	CDS	79627443	79627446	-
GWHAAZE00000001	CDS	79626878	79627071	-
GWHAAZE00000001	CDS	79625834	79626006	-
GWHAAZE00000001	CDS	79625576	79625738	-
GWHAAZE00000001	CDS	79623016	79623339	-

Transcript Sequence
>GWHTAAZE002486 ATGGTTATGGGTAATGTTAGTGGTAGAAAAGATGAAGCAGGGCCCTCTGGAGACAAGACCCAAGAGGAAGAGGAGTATATGGAGTATGCGGCGCAAGTTAGCAACTATCGTGCGCGGGGACCCTTTCCAGAGTCCATGGTTCAGTCCCCTCCCCATAGCCCTAGGGCTTACCAGTCACCTCTGCTCTTCACTCCGCAGGTCCCCGCTGTTCCTTTACGAAGGCCTAACGAGATGATGCAAATGGTAAGCGATGAATCAAAACAACAGAGGAGAGAGTTCGAGTACGGGAAGGGGATACCAACAATGATCACATGGAATCATGACGGTAAGCAAGTGGCTGTTGAGGGATCATGGGATAACTGGAAAACAAGAGAATTCTTGCAGCGATCGGGCAGAGACTTCACGGTTATGAAGGTACTCCCATCGGGTGTTTACCATTACCGGTTTGTTGTTGACGGGCACTGGAGGTATGCGCCGGATTTCCCACTGGAGACTGATGATGTGGGGAATATTTTCAACATTTTGGACTTGCAGGATCATATTCCTGAAGTCCCTAACAACATTCCTGTTTTAGACTCTCCTTCCTCCCCAGTATCAAGCTACAACAATGCGCCCTTCACTTTGGAAGATTTCAACGAGAAGTTGCCAGAATTACCCCCACTTTTACAGCAAGCGCCTCTAGATCAGCCAACTTCATACAGTGGCAGCCCCGACTTTCTCCAAAAGCCATTACCCGCAGTTTTGAACCATCTTTATATTCAGAGAGAGCGAAGTGGTCAGTCCATGGTGGCACTAAGCTCAACGCACCGGTTTCATACAAAATACGTGACGGTTGTACTTTACAAGTCCTTGAAAAGG

Network for GWHGAAZE002482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16561.6	AMPK1_CBM	99	179	3.30E-30
PF04739.16	AMPKBI	213	282	2.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07199	PRKAB	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		AMPK signaling pathway	map04152
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.627
	SRR3591706	second leaf	28.519
	SRR3591707	mature leaf	28.193
	SRR3591708	Shoot apex	48.977
	SRR3591709	Stem	13.487
	SRR3591710	White floral bud	9.750
	SRR3591711	White flower	18.990
	SRR3591712	Green floral bud	34.447
	SRR3591713	Yellow flower	17.708
SRP173429	SRR8316895	Juvenile bud stage	18.427
	SRR8316896	Juvenile bud stage	21.556
	SRR8316897	Juvenile bud stage	8.653
	SRR8316894	Third green stage	12.234
	SRR8316900	Third green stage	33.051
	SRR8316901	Third green stage	33.452
	SRR8316898	Complete white stage	2.056
	SRR8316899	Complete white stage	35.679
	SRR8316903	Complete white stage	2.594
	SRR8316902	Silver flowering stage	3.602
	SRR8316904	Silver flowering stage	3.232
	SRR8316905	Silver flowering stage	2.687
	SRR8316906	Gold flowering stage	8.666
	SRR8316907	Gold flowering stage	3.725
	SRR8316908	Gold flowering stage	7.943
SRP132670	SRR6706286	Control	35.187
	SRR6706287	Light intensity 50%	41.446
	SRR6706288	Light intensity 20%	52.211
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.374
	CNS0095593	Slightly white alabastrum(diploid) 2	24.963
	CNS0095594	Slightly white alabastrum(diploid) 3	13.591
	CNS0095595	Whole white alabastrum(diploid) 2	23.273
	CNS0095596	Whole white alabastrum(diploid) 3	21.130
	CNS0095597	Whole white alabastrum(diploid) 4	14.822
	CNS0095598	Silvery flower (diploied) 1	8.012
	CNS0095599	Silvery flower (diploied) 2	5.076
	CNS0095600	Silvery flower (diploied) 3	6.181
	CNS0095601	Golden flower (diploid) 1	6.101
	CNS0095602	Golden flower (diploid) 2	4.718
	CNS0095603	Golden flower (diploid) 3	3.701
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.817
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.462
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.098
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.494
	CNS0095610	Silvery flower (tetraploid) 1	12.011
	CNS0095611	Silvery flower (tetraploid) 2	7.067
	CNS0095612	Silvery flower (tetraploid) 3	16.268
	CNS0095613	Golden flower (tetraploid) 1	7.125
	CNS0095614	Golden flower (tetraploid) 2	9.755
	CNS0095615	Golden flower (tetraploid) 3	7.385
CRA001975	CRR073297	Stem 1	37.517
	CRR073298	Stem 2	37.262
	CRR073299	Stem 3	34.483
	CRR073300	Leaf 1	57.270
	CRR073301	Leaf 2	57.614
	CRR073302	Leaf 3	54.477
	CRR073303	Juvenile bud 1	38.596
	CRR073304	Juvenile bud 2	23.590
	CRR073305	Juvenile bud 3	38.962
	CRR073306	Third green 1	1.887
	CRR073307	Third green 2	3.632
	CRR073308	Third green 3	3.676
	CRR073309	Second white 1	9.913
	CRR073310	Second white 2	14.312
	CRR073311	Second white 3	11.706
	CRR073312	Silver flowering 1	6.231
	CRR073313	Silver flowering 2	11.071
	CRR073314	Silver flowering 3	6.918
	CRR073315	Gold flowering 1	21.609
	CRR073316	Gold flowering 2	21.574
	CRR073317	Gold flowering 3	17.185
	CRR073318	Tawny withering 1	33.026
	CRR073319	Tawny withering 2	70.419
	CRR073320	Tawny withering 3	43.086