Gene detail

Detail information of GWHGAAZE002475

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804151.1	0	PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COG	YP_003391696.1	4E-21	glycoside hydrolase family 28
Swissprot	tr\|Q05967\|PGLR_TOBAC	3E-173	Polygalacturonase (Precursor)
trEMBL	tr\|W9QSP5\|W9QSP5_9ROSA	1E-172	Uncharacterized protein {ECO:0000313\|EMBL:EXB53587.1}
TAIR10	AT3G07820.1	7E-113	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79460413	79461794	-
GWHAAZE00000001	mRNA	79460413	79461794	-
GWHAAZE00000001	exon	79460413	79461156	-
GWHAAZE00000001	exon	79461282	79461593	-
GWHAAZE00000001	exon	79461672	79461794	-
GWHAAZE00000001	CDS	79461672	79461794	-
GWHAAZE00000001	CDS	79461282	79461593	-
GWHAAZE00000001	CDS	79460413	79461156	-

Transcript Sequence
>GWHTAAZE002479 ATGGGTGTGAAATTTAGCATTACATCCACTCTTCTCTTGTTCTTTCTTGCACATATACAATGTGCACCTAGAGCCTTTGACGTTACCAAATACGGTGCAAAGCCTAATGCAGATATCACTCAGGCCATAATGAGAGCCTGGAAAGAGGCATGTGCATCAGCAACACCAAGTGCAGTGGTGATTCCAAAAGGCACATTTTTATCAAACGAATTGAAGATTGAGGGTCCATGCAAAGCTCCAATTGAGTTCCACCTACAGGCCACATTGAAAGCCCCCGCCAATCCCAGCAAAATGATGGGTGGTGGTGAATGGATCACTTTCCGAAATATTGACCATTTCACGATGTTGGGTGGTGGAGTCTTTGACGGCCAAGGCAAAATTGCTTGGGCTAAAAATGATTGCAAACAAACAGGAAAATGCAGTAAACTCCCCAATAACCTTAGCTTCAACTTCCTCACCAACTCAGTGCTCCGCGATGTAACTAGTCTTGACAGCAAATTGTTTCACGTTAATGTTTTGGGTTGTAAGAACGTAACTTTCCAACATTTCACTGTCACTGCACCCGGTGAAAGCCTCAATACTGATGGGATTCACATTGGCCGTTCAAGTGAAATCACTATCACCAATTCAGTCATAAAGACAGGAGACGATTGTGTGTCCATTGGTGATGGTAGCCGACAAGTGCATATCGAGAAAGTGACTTGCGGGCCCGGCCATGGTATCAGCATTGGTAGTCTTGGTAAGTACCCCAAAGAAGAAGATGTGGTCGGAATCTTCGTTAAGAACTGTACTCTCATCAACACCGGAAATGGAGTGAGAGTGAAGACATGGCCGGCTTCAGAGCCTGGCGTTGCCACAGACTTACACTTTGAGGATATTATCATGAACAATGTTGGCACTCCCATCCTTATTGATCAAGTGTACTGTCCACATAACAACTGCAAAGCATTGGTTCCCTCAAATGTGAAGCTTAGCAAAATTAGCTTTAAGAACATAAGGGGTACTTCATCAACTCCGGTCGCTGTGAAGCTTGCTTGCAGCAAGAAATTTCCATGCCACGGGGTGGAGGTTGCTAACATTAACTTGATGTACAATGGGAAGGTAGGCCATGCCAAAAGCGAGTGTACTGATGTGAAACCAGTTTTCTCCGGCAAAATGAATCCACCAGGATGTGCCTAA

Network for GWHGAAZE002475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	51	379	3.70E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.736
	SRR3591706	second leaf	0.086
	SRR3591707	mature leaf	0.150
	SRR3591708	Shoot apex	1.741
	SRR3591709	Stem	8.376
	SRR3591710	White floral bud	1118.953
	SRR3591711	White flower	55.046
	SRR3591712	Green floral bud	1068.036
	SRR3591713	Yellow flower	46.177
SRP173429	SRR8316895	Juvenile bud stage	23.408
	SRR8316896	Juvenile bud stage	103.578
	SRR8316897	Juvenile bud stage	146.563
	SRR8316894	Third green stage	56.481
	SRR8316900	Third green stage	411.116
	SRR8316901	Third green stage	426.457
	SRR8316898	Complete white stage	0.460
	SRR8316899	Complete white stage	5.475
	SRR8316903	Complete white stage	1.296
	SRR8316902	Silver flowering stage	10.409
	SRR8316904	Silver flowering stage	20.416
	SRR8316905	Silver flowering stage	5.860
	SRR8316906	Gold flowering stage	4.816
	SRR8316907	Gold flowering stage	1.494
	SRR8316908	Gold flowering stage	1.447
SRP132670	SRR6706286	Control	361.829
	SRR6706287	Light intensity 50%	352.046
	SRR6706288	Light intensity 20%	323.807
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	494.616
	CNS0095593	Slightly white alabastrum(diploid) 2	398.900
	CNS0095594	Slightly white alabastrum(diploid) 3	517.296
	CNS0095595	Whole white alabastrum(diploid) 2	1218.815
	CNS0095596	Whole white alabastrum(diploid) 3	1426.864
	CNS0095597	Whole white alabastrum(diploid) 4	1728.671
	CNS0095598	Silvery flower (diploied) 1	54.541
	CNS0095599	Silvery flower (diploied) 2	170.970
	CNS0095600	Silvery flower (diploied) 3	38.611
	CNS0095601	Golden flower (diploid) 1	55.633
	CNS0095602	Golden flower (diploid) 2	33.280
	CNS0095603	Golden flower (diploid) 3	33.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1338.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1622.184
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.749
	CNS0095607	Whole white alabastrum(tetraploid) 1	2539.142
	CNS0095608	Whole white alabastrum(tetraploid) 2	2758.368
	CNS0095609	Whole white alabastrum(tetraploid) 3	1235.465
	CNS0095610	Silvery flower (tetraploid) 1	27.695
	CNS0095611	Silvery flower (tetraploid) 2	133.251
	CNS0095612	Silvery flower (tetraploid) 3	324.542
	CNS0095613	Golden flower (tetraploid) 1	75.119
	CNS0095614	Golden flower (tetraploid) 2	12.877
	CNS0095615	Golden flower (tetraploid) 3	203.075
CRA001975	CRR073297	Stem 1	146.253
	CRR073298	Stem 2	151.479
	CRR073299	Stem 3	56.871
	CRR073300	Leaf 1	755.944
	CRR073301	Leaf 2	484.775
	CRR073302	Leaf 3	282.348
	CRR073303	Juvenile bud 1	621.806
	CRR073304	Juvenile bud 2	474.486
	CRR073305	Juvenile bud 3	46.721
	CRR073306	Third green 1	262.178
	CRR073307	Third green 2	349.865
	CRR073308	Third green 3	318.964
	CRR073309	Second white 1	8.841
	CRR073310	Second white 2	71.700
	CRR073311	Second white 3	69.831
	CRR073312	Silver flowering 1	265.720
	CRR073313	Silver flowering 2	167.983
	CRR073314	Silver flowering 3	140.183
	CRR073315	Gold flowering 1	465.268
	CRR073316	Gold flowering 2	139.382
	CRR073317	Gold flowering 3	92.113
	CRR073318	Tawny withering 1	313.221
	CRR073319	Tawny withering 2	321.862
	CRR073320	Tawny withering 3	293.136