Detail information of GWHGAAZE002461


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272334.10PREDICTED: scarecrow-like transcription factor PAT1 [Vitis vinifera]
Swissprottr|Q9LDL7|PAT1_ARATH0Scarecrow-like transcription factor PAT1
trEMBLtr|F6HHL9|F6HHL9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51715.1}
TAIR10AT5G48150.20GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7917472679176264-
GWHAAZE00000001mRNA7917472679176264-
GWHAAZE00000001exon7917609179176264-
GWHAAZE00000001exon7917472679176060-
GWHAAZE00000001CDS7917609179176264-
GWHAAZE00000001CDS7917472679176060-
Transcript Sequence

Network for GWHGAAZE002461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS1345022.80E-136
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.154
SRR3591706second leaf21.022
SRR3591707mature leaf22.973
SRR3591708Shoot apex36.646
SRR3591709Stem40.600
SRR3591710White floral bud17.531
SRR3591711White flower12.533
SRR3591712Green floral bud25.033
SRR3591713Yellow flower4.296
SRP173429 SRR8316895Juvenile bud stage 17.065
SRR8316896Juvenile bud stage 17.093
SRR8316897Juvenile bud stage 8.729
SRR8316894Third green stage 6.317
SRR8316900Third green stage 18.289
SRR8316901Third green stage 20.231
SRR8316898Complete white stage 4.820
SRR8316899Complete white stage 35.510
SRR8316903Complete white stage 8.584
SRR8316902Silver flowering stage2.190
SRR8316904Silver flowering stage3.803
SRR8316905Silver flowering stage1.184
SRR8316906Gold flowering stage 3.252
SRR8316907Gold flowering stage 3.303
SRR8316908Gold flowering stage 4.117
SRP132670SRR6706286Control13.935
SRR6706287Light intensity 50%14.833
SRR6706288Light intensity 20%16.547
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.486
CNS0095593Slightly white alabastrum(diploid) 222.909
CNS0095594Slightly white alabastrum(diploid) 312.299
CNS0095595Whole white alabastrum(diploid) 210.538
CNS0095596Whole white alabastrum(diploid) 36.430
CNS0095597Whole white alabastrum(diploid) 48.324
CNS0095598Silvery flower (diploied) 116.005
CNS0095599Silvery flower (diploied) 215.345
CNS0095600Silvery flower (diploied) 310.773
CNS0095601Golden flower (diploid) 117.233
CNS0095602Golden flower (diploid) 215.213
CNS0095603Golden flower (diploid) 314.747
CNS0095604Slightly white alabastrum(tetraploid) 110.322
CNS0095605Slightly white alabastrum(tetraploid) 28.121
CNS0095606Slightly white alabastrum(tetraploid) 326.879
CNS0095607Whole white alabastrum(tetraploid) 16.665
CNS0095608Whole white alabastrum(tetraploid) 23.257
CNS0095609Whole white alabastrum(tetraploid) 39.543
CNS0095610Silvery flower (tetraploid) 14.787
CNS0095611Silvery flower (tetraploid) 28.706
CNS0095612Silvery flower (tetraploid) 34.292
CNS0095613Golden flower (tetraploid) 13.869
CNS0095614Golden flower (tetraploid) 26.181
CNS0095615Golden flower (tetraploid) 310.111
CRA001975CRR073297Stem 122.145
CRR073298Stem 220.770
CRR073299Stem 327.197
CRR073300Leaf 121.031
CRR073301Leaf 223.815
CRR073302Leaf 318.593
CRR073303Juvenile bud 119.301
CRR073304Juvenile bud 211.631
CRR073305Juvenile bud 332.304
CRR073306Third green 17.664
CRR073307Third green 210.713
CRR073308Third green 39.245
CRR073309Second white 13.823
CRR073310Second white 21.524
CRR073311Second white 32.441
CRR073312Silver flowering 11.512
CRR073313Silver flowering 22.023
CRR073314Silver flowering 31.590
CRR073315Gold flowering 116.224
CRR073316Gold flowering 219.018
CRR073317Gold flowering 317.116
CRR073318Tawny withering 141.308
CRR073319Tawny withering 217.426
CRR073320Tawny withering 343.062