Gene detail

Detail information of GWHGAAZE002459

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762151.1	9.4934E-178	PREDICTED: probable serine/threonine-protein kinase WNK11 [Nicotiana sylvestris]
COG	YP_008737799.1	8E-25	serine/threonine protein kinase
Swissprot	tr\|Q6ICW6\|WNK11_ARATH	9E-160	Probable serine/threonine-protein kinase WNK11
trEMBL	tr\|M1CYZ1\|M1CYZ1_SOLTU	2E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400077830}
TAIR10	AT5G55560.1	2E-125	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79146755	79148439	-
GWHAAZE00000001	mRNA	79146755	79148439	-
GWHAAZE00000001	exon	79146755	79147141	-
GWHAAZE00000001	exon	79147936	79148439	-
GWHAAZE00000001	CDS	79147936	79148439	-
GWHAAZE00000001	CDS	79146755	79147141	-

Transcript Sequence
>GWHTAAZE002463 ATGCCATCTGCAAGTCCCGATTCATCTGATCAGGACCCGGAACCATTTGTTGAGGTTGACCCATCGGGCCGATTCGGACGGTATAGTGATCTATTCGGCTCCGGTGCCGTCAAGAAAGTTTACAGGGGATTTGATCAAGAGGAAGGTCGGGAAGTGGCTTGGAACCAGGTTCGGTTGAGGAAGTTCAGTAATGACCCGTCCGTCATCAGTAGGCTTTTCTCGGAAATCGAGTTGCTCAAGACACTTAAGAACGATAACATTATTGTCCTCTACAGTTTCTGGAAGGACACTGAACACGACACACTGAATTTCATTACTGAAGCATGCGCTTCGGGTAGTCTGAGGGATTACAGGAAGAAGCATCACCGTGTGTCGCTAAAGGCGTTGAAGAAATGGTCAAGACAAATTCTATGGGGCTTGGAGTATCTACATACCCACGAGCCTTGTATCATTCATAGAGATCTGAATTGCAGTAACATTTTCATCAACGGGAACATCGGAAAGGTCAAGATTGGTGATCTAGGATTAGCGGCAGTAGTAGGGAAGAGCCATGCAGCCCATTCGTTGTTAGGGACACCAGAGTACATGGCACCAGAGCTATATGAGGAGGATTACACTGAGCTAGTGGACATATATTCTTTCGGAATGTGCCTCCTCGAAATGGCCACAATGGAGATACCCTACAGCGAGTGTGACAGCATAGCTAAGATATACAAGAAGGTGACCTCTGGGGTGAAGCCCCAAGCCTTTAACAAAGTGAGCGATCAAGAACTGAAGGCCTTCATCGAGAGATGCATTGGCCAGCCCCGGGCCAGACCCTCGGCCTCCGATCTTCTTAACGACTCGTTCCTTTCTGATGTTAGTAGCGTTGAAACCGAGGGTACCAGTTGA

Network for GWHGAAZE002459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	31	284	4.80E-51

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.325
	SRR3591706	second leaf	10.201
	SRR3591707	mature leaf	14.564
	SRR3591708	Shoot apex	10.213
	SRR3591709	Stem	23.378
	SRR3591710	White floral bud	15.393
	SRR3591711	White flower	28.987
	SRR3591712	Green floral bud	16.131
	SRR3591713	Yellow flower	30.809
SRP173429	SRR8316895	Juvenile bud stage	16.102
	SRR8316896	Juvenile bud stage	16.984
	SRR8316897	Juvenile bud stage	17.745
	SRR8316894	Third green stage	5.411
	SRR8316900	Third green stage	14.479
	SRR8316901	Third green stage	20.984
	SRR8316898	Complete white stage	7.277
	SRR8316899	Complete white stage	37.041
	SRR8316903	Complete white stage	8.053
	SRR8316902	Silver flowering stage	17.299
	SRR8316904	Silver flowering stage	13.248
	SRR8316905	Silver flowering stage	8.457
	SRR8316906	Gold flowering stage	36.344
	SRR8316907	Gold flowering stage	42.658
	SRR8316908	Gold flowering stage	40.440
SRP132670	SRR6706286	Control	25.491
	SRR6706287	Light intensity 50%	33.459
	SRR6706288	Light intensity 20%	29.996
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.079
	CNS0095593	Slightly white alabastrum(diploid) 2	22.620
	CNS0095594	Slightly white alabastrum(diploid) 3	17.523
	CNS0095595	Whole white alabastrum(diploid) 2	14.355
	CNS0095596	Whole white alabastrum(diploid) 3	10.817
	CNS0095597	Whole white alabastrum(diploid) 4	15.382
	CNS0095598	Silvery flower (diploied) 1	16.610
	CNS0095599	Silvery flower (diploied) 2	15.205
	CNS0095600	Silvery flower (diploied) 3	19.861
	CNS0095601	Golden flower (diploid) 1	18.135
	CNS0095602	Golden flower (diploid) 2	21.647
	CNS0095603	Golden flower (diploid) 3	19.066
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.993
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.764
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.797
	CNS0095610	Silvery flower (tetraploid) 1	20.003
	CNS0095611	Silvery flower (tetraploid) 2	14.556
	CNS0095612	Silvery flower (tetraploid) 3	18.305
	CNS0095613	Golden flower (tetraploid) 1	14.192
	CNS0095614	Golden flower (tetraploid) 2	19.660
	CNS0095615	Golden flower (tetraploid) 3	17.514
CRA001975	CRR073297	Stem 1	24.615
	CRR073298	Stem 2	18.508
	CRR073299	Stem 3	22.804
	CRR073300	Leaf 1	27.877
	CRR073301	Leaf 2	32.889
	CRR073302	Leaf 3	33.865
	CRR073303	Juvenile bud 1	37.917
	CRR073304	Juvenile bud 2	42.034
	CRR073305	Juvenile bud 3	43.998
	CRR073306	Third green 1	53.101
	CRR073307	Third green 2	48.141
	CRR073308	Third green 3	39.092
	CRR073309	Second white 1	28.983
	CRR073310	Second white 2	27.660
	CRR073311	Second white 3	30.126
	CRR073312	Silver flowering 1	32.252
	CRR073313	Silver flowering 2	24.750
	CRR073314	Silver flowering 3	15.100
	CRR073315	Gold flowering 1	30.074
	CRR073316	Gold flowering 2	40.087
	CRR073317	Gold flowering 3	27.894
	CRR073318	Tawny withering 1	67.448
	CRR073319	Tawny withering 2	89.466
	CRR073320	Tawny withering 3	68.592