Gene detail

Detail information of GWHGAAZE002452

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI28402.3	0	unnamed protein product [Vitis vinifera]
COG	YP_007055352.1	0	threonyl-tRNA synthetase
Swissprot	tr\|O04630\|SYTM_ARATH	3E-134	Threonine--tRNA ligase, mitochondrial (Precursor)
trEMBL	tr\|F6HHK5\|F6HHK5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51701.1}
TAIR10	AT2G04842.1	0	threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79047061	79055333	-
GWHAAZE00000001	mRNA	79047061	79055333	-
GWHAAZE00000001	exon	79055007	79055333	-
GWHAAZE00000001	exon	79052710	79052856	-
GWHAAZE00000001	exon	79052428	79052575	-
GWHAAZE00000001	exon	79051941	79052194	-
GWHAAZE00000001	exon	79051027	79051404	-
GWHAAZE00000001	exon	79050095	79050407	-
GWHAAZE00000001	exon	79049990	79050012	-
GWHAAZE00000001	exon	79049307	79049507	-
GWHAAZE00000001	exon	79047061	79047445	-
GWHAAZE00000001	CDS	79055007	79055333	-
GWHAAZE00000001	CDS	79052710	79052856	-
GWHAAZE00000001	CDS	79052428	79052575	-
GWHAAZE00000001	CDS	79051941	79052194	-
GWHAAZE00000001	CDS	79051027	79051404	-
GWHAAZE00000001	CDS	79050095	79050407	-
GWHAAZE00000001	CDS	79049990	79050012	-
GWHAAZE00000001	CDS	79049307	79049507	-
GWHAAZE00000001	CDS	79047185	79047445	-
GWHAAZE00000001	three_prime_UTR	79047061	79047184	-

Transcript Sequence
>GWHTAAZE002456 ATGTTAGTCCTACGCAGAATGGCTACATTCTCATCCTTCTCTTCCTCTCTTCGACTTTCCACAGACCCTAACCCCACTTCACTCTTCTCTCTCCGCTCCAATTCCAAAACCTTTACCTCCATCTCCAAACGAATCTCCCACCGTAAATTCATCCTCTACAACAAGAGAAACAATGGCTTCTCTACTTCATCATCTGCTGTTTCCACCCATTCGACCGATACTGCTGTTGTTTCCCCAATTGATAAAGAGTCCGATGAGGTTGTCAAGGAGAGAGTTGTTCTCCCTACTAATGATTCCTCCGATAAGCTTCTCAGAATTCGCCACACGTGTGCTCATGTAATGGCCATGGCTGTTCAAAAGATCTTCCCAGATGCAAAGGTGACAATAGGGCCATGGATTGAAAATGGGTTTTATTATGACTTTGACATGGAGCCGTTGACAGATAAGGACCTGAAGAGAATTAAAAAGGAAATGGATCGCATCATCAGTAAAAATTTACCTCTGGTTAGAGAAGAAGTTACCAGAGATGAAGCTCAGAAAAGAATAACGGCAATCAATGAACCTTACAAAATGGAGATTCTTGAAAGTATCAAGGAAGATCCTATTACTATCTATCATATTGGTAATGAATGGTGGGATTTATGTGCTGGCCCCCATGTTGAATCTACTGGAAATATTAGTAGGAAAGCTGTTGAACTTGAATCTGTAGCTGGCGCTTACTGGAGAGGAGACACAAATAAACCGATGCTTCAAAGGATTTACGGCACAGCGTGGGAAAACGAAGAACAATTGAAGGCATACCTAAATTTTAAAGAGGAGGCTAAACGCCGGGATCATAGGCGCCTTGGTCAAGATCTTGATCTCTTCTCTATACAGGATGATGCTGGTGGAGGGTTAGTATTTTGGCACCCTAAGGGTGCTATAGTGAGGCACATAATAGAGGATACATGGAAAAACATTCATATACAATGTGGTTATGATCTTCTTTATACGCCACACGTGGCGAAGGCAGATCTTTGGAAAATCAGTGGCCATCTAGATTTCTACAGAGAGAATATGTATGATCAGATGAATATTGAGGAAGAACTTTATCAGCTTAGACCAATGAATTGCCCATACCATATCTTGGTTTATAAAAGGAAACAGCACTCTTATCGAGATTTCCCAATTAGGGTTGCAGAGCTAGGAACAGTATATAGATATGAGTTATCTGGAGCTTTACACGGGCTCTTCCGTGTAAGAGGTTTCACCCAGGATGATGCGCACATATTTTGTTTAGAGGATCAAATAAAAGATGAAATTAGGGGTGTCCTAGATCTTACAGAGGGAATATTACTGCAATTCGGTTTTGACAAGTATGAAGTGAACCTTTCGACAAGGCCCGAGAAATCTGTGGGTGGTGATGATATATGGGAAAAGGCAACATCAGCCCTCAAGGATGCTTTGGATGACAAAGGGTGGAACTATCAAATTGATGAAGGTGGTGGTGCTTTTTACGGCCCAAAGATTGATCTCAAGATCGAGGATGCTCTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGCACGTGTCAGGTCATATTTGTTTCATGTTGATTTCAATTTACCGCAACGTTTTGACATGACTTATGTTGACTCAAACTCAGAGAAGAAGAGGCCCATCATGATCCACAGAGCAGTTCTCGGATCTTTGGAACGTTTCTTTGGAGTGTTAATAGAACATTATGCTGGAGATTTCCCCCTTTGGCTTTCTCCAATCCAAGCTCGGGTTTTGCCTGTCACGGATATACAGCTTGACTACTGCAATGAGGTGACAAGAAAATTGAAAGAAAGTGGTATTCGGGCCGAAGTTTGCAGTGGTGAGCGCCTGCCGAAGCTCATCAGAAACTCAGAGAAGCAAAAAATACCGTTGATGGCGGTTGTGGGGCCAAACGAGGTCGAAACACAAACCGTGACAGTCAGATCTAGGTTTGGTGGGGAGCTGGGGACCATGAAGATTGATGATTTTGTCAGCAGAACCAAGTTTGCTGCTGAAAGCAGAACATTCATTTGAATTGCTTTCTTGTTGGAAATTGTTGGTGTACTGGCAGAGACTTTAATTATTGTATAACATTTGACAACATGAATTACATAGAGAAAAATGATACTATTAATAAATAGAAACGTTCAAGATGGAA

Network for GWHGAAZE002452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07973.15	tRNA_SAD	202	254	8.20E-12
PF00587.26	tRNA-synt_2b	361	575	2.80E-37
PF03129.21	HGTP_anticodon	587	671	6.80E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01868	TARS, thrS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006435	biological_process	threonyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0043039	biological_process	tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0004829	molecular_function	threonine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.210
	SRR3591706	second leaf	73.848
	SRR3591707	mature leaf	114.534
	SRR3591708	Shoot apex	34.019
	SRR3591709	Stem	17.879
	SRR3591710	White floral bud	25.533
	SRR3591711	White flower	28.684
	SRR3591712	Green floral bud	25.312
	SRR3591713	Yellow flower	20.503
SRP173429	SRR8316895	Juvenile bud stage	19.394
	SRR8316896	Juvenile bud stage	26.076
	SRR8316897	Juvenile bud stage	14.251
	SRR8316894	Third green stage	13.543
	SRR8316900	Third green stage	47.359
	SRR8316901	Third green stage	45.650
	SRR8316898	Complete white stage	16.256
	SRR8316899	Complete white stage	40.079
	SRR8316903	Complete white stage	26.725
	SRR8316902	Silver flowering stage	16.478
	SRR8316904	Silver flowering stage	20.577
	SRR8316905	Silver flowering stage	12.535
	SRR8316906	Gold flowering stage	40.641
	SRR8316907	Gold flowering stage	30.663
	SRR8316908	Gold flowering stage	41.510
SRP132670	SRR6706286	Control	37.143
	SRR6706287	Light intensity 50%	40.672
	SRR6706288	Light intensity 20%	42.643
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.870
	CNS0095593	Slightly white alabastrum(diploid) 2	17.963
	CNS0095594	Slightly white alabastrum(diploid) 3	15.494
	CNS0095595	Whole white alabastrum(diploid) 2	18.949
	CNS0095596	Whole white alabastrum(diploid) 3	18.306
	CNS0095597	Whole white alabastrum(diploid) 4	19.806
	CNS0095598	Silvery flower (diploied) 1	24.415
	CNS0095599	Silvery flower (diploied) 2	17.803
	CNS0095600	Silvery flower (diploied) 3	36.103
	CNS0095601	Golden flower (diploid) 1	22.436
	CNS0095602	Golden flower (diploid) 2	29.626
	CNS0095603	Golden flower (diploid) 3	29.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.472
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.222
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.016
	CNS0095610	Silvery flower (tetraploid) 1	68.372
	CNS0095611	Silvery flower (tetraploid) 2	81.537
	CNS0095612	Silvery flower (tetraploid) 3	54.590
	CNS0095613	Golden flower (tetraploid) 1	31.656
	CNS0095614	Golden flower (tetraploid) 2	43.130
	CNS0095615	Golden flower (tetraploid) 3	31.448
CRA001975	CRR073297	Stem 1	19.702
	CRR073298	Stem 2	18.272
	CRR073299	Stem 3	16.330
	CRR073300	Leaf 1	21.998
	CRR073301	Leaf 2	21.804
	CRR073302	Leaf 3	16.071
	CRR073303	Juvenile bud 1	22.151
	CRR073304	Juvenile bud 2	20.111
	CRR073305	Juvenile bud 3	19.351
	CRR073306	Third green 1	13.171
	CRR073307	Third green 2	9.358
	CRR073308	Third green 3	11.068
	CRR073309	Second white 1	12.598
	CRR073310	Second white 2	20.715
	CRR073311	Second white 3	18.658
	CRR073312	Silver flowering 1	10.031
	CRR073313	Silver flowering 2	6.314
	CRR073314	Silver flowering 3	9.356
	CRR073315	Gold flowering 1	59.993
	CRR073316	Gold flowering 2	80.999
	CRR073317	Gold flowering 3	33.692
	CRR073318	Tawny withering 1	6.965
	CRR073319	Tawny withering 2	10.363
	CRR073320	Tawny withering 3	5.995