Gene detail

Detail information of GWHGAAZE002448

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804151.1	4.0465E-176	PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COG	YP_001820212.1	3E-25	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|Q05967\|PGLR_TOBAC	2E-170	Polygalacturonase (Precursor)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	7E-174	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G14040.1	4E-114	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78958336	78960277	-
GWHAAZE00000001	mRNA	78958336	78960277	-
GWHAAZE00000001	exon	78958336	78959097	-
GWHAAZE00000001	exon	78959226	78959537	-
GWHAAZE00000001	exon	78960269	78960277	-
GWHAAZE00000001	CDS	78960269	78960277	-
GWHAAZE00000001	CDS	78959226	78959537	-
GWHAAZE00000001	CDS	78958336	78959097	-

Transcript Sequence
>GWHTAAZE002452 ATGTTAATGGCTCTTCTGACTGCTTGGAAAGAGGCATGTGCATCACCAACTCCAAGTACAATAGTGATCCCAAAAGGCACATTTTTGTTGAATCAAGTGTCAATTGAAGGTCCTTGCAAGGCTCCAATAACCCTTAGATTAGAGGCAATATTAAAGGCGCCCGCTGACCCAGCCCAATTAAAGCCGGATCTAGAATGGGTCTGCTTTAGAAACATTGACCAATTCACAATGATTGGTGGTGGCACCTTTGATGGACAAGGAAAAATTGCTTGGGCCAACAATGATTGCAAGGCAACCGGAAAATGCAATAAACTTCCTAATAATCTCAGCTTGAACTTCCTCACCAATACGGTGATCCAAGAGATAACTTCTCTTGATAGTAAGTTGTTTCATGTCAATGTGCTCGGATGCAAGAACATAAGTTTTGTACGCTTTACCATCACCGCCCCCGAGGATAGCCTTAACACGGATGGAATCCACATCGGACGCTCAACCGGTGTCAAGATCATGGAATCTGATATAAAGACTGGTGATGATTGTGTGTCTATTGGTGATGGCAGCCAACAGGTTACTATCGAGAAAGTAACTTGTGGACCTGGTCATGGGATTGCCGTGGGAAGCCTTGGCAAGTACCCTAAGGAGGAACCCGTGGTTGGAATCTTTGTTAGGAACTGCACCATCACTGGAACAGATAATGGTGTAAGAGTTAAGACGTGGCCGGCTTCTGAACCTGGGGAGGCTTCTGATATTCACTTTGAGGATATTATCATGAATAATGTGAGCAATCCTGTCCTTATTGATCAAGAGTATTGTCCTAGTGGTCAATGCACAAAACAGATACCTTCAAAAGTGAAGATTAGCAAAGTTAGCTTTAAGAACATAAGGGGGACATCAGGGACGCAACTTGCTGTGAAAATTGTTTGCAGTCAGGGCATACCATGTGACGGTGTGGAAGTTGCAGATATTGACCTCACATACAGTGGAAAGGAAGGCCCAGCCACAAGCTTATGTGCCAACGTTAAGCCAACTTTCATTGGTAAAATAAATCCTCCCGCGTGTGCCGCGCCTGCTCAACCTGCATAA

Network for GWHGAAZE002448

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	13	341	2.90E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.660
	SRR3591706	second leaf	0.100
	SRR3591707	mature leaf	0.262
	SRR3591708	Shoot apex	1.128
	SRR3591709	Stem	4.309
	SRR3591710	White floral bud	422.374
	SRR3591711	White flower	18.854
	SRR3591712	Green floral bud	750.472
	SRR3591713	Yellow flower	10.289
SRP173429	SRR8316895	Juvenile bud stage	29.413
	SRR8316896	Juvenile bud stage	223.297
	SRR8316897	Juvenile bud stage	139.104
	SRR8316894	Third green stage	113.185
	SRR8316900	Third green stage	564.809
	SRR8316901	Third green stage	587.379
	SRR8316898	Complete white stage	0.817
	SRR8316899	Complete white stage	5.467
	SRR8316903	Complete white stage	1.136
	SRR8316902	Silver flowering stage	9.788
	SRR8316904	Silver flowering stage	16.669
	SRR8316905	Silver flowering stage	5.274
	SRR8316906	Gold flowering stage	3.219
	SRR8316907	Gold flowering stage	0.677
	SRR8316908	Gold flowering stage	0.885
SRP132670	SRR6706286	Control	275.233
	SRR6706287	Light intensity 50%	254.469
	SRR6706288	Light intensity 20%	235.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	448.764
	CNS0095593	Slightly white alabastrum(diploid) 2	331.147
	CNS0095594	Slightly white alabastrum(diploid) 3	498.851
	CNS0095595	Whole white alabastrum(diploid) 2	806.591
	CNS0095596	Whole white alabastrum(diploid) 3	1075.253
	CNS0095597	Whole white alabastrum(diploid) 4	832.142
	CNS0095598	Silvery flower (diploied) 1	41.201
	CNS0095599	Silvery flower (diploied) 2	126.112
	CNS0095600	Silvery flower (diploied) 3	32.285
	CNS0095601	Golden flower (diploid) 1	44.534
	CNS0095602	Golden flower (diploid) 2	26.513
	CNS0095603	Golden flower (diploid) 3	25.211
	CNS0095604	Slightly white alabastrum(tetraploid) 1	801.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	828.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.257
	CNS0095607	Whole white alabastrum(tetraploid) 1	1355.727
	CNS0095608	Whole white alabastrum(tetraploid) 2	1478.831
	CNS0095609	Whole white alabastrum(tetraploid) 3	851.237
	CNS0095610	Silvery flower (tetraploid) 1	17.469
	CNS0095611	Silvery flower (tetraploid) 2	69.568
	CNS0095612	Silvery flower (tetraploid) 3	137.188
	CNS0095613	Golden flower (tetraploid) 1	34.193
	CNS0095614	Golden flower (tetraploid) 2	5.877
	CNS0095615	Golden flower (tetraploid) 3	87.958
CRA001975	CRR073297	Stem 1	119.031
	CRR073298	Stem 2	168.034
	CRR073299	Stem 3	95.203
	CRR073300	Leaf 1	464.884
	CRR073301	Leaf 2	410.886
	CRR073302	Leaf 3	312.212
	CRR073303	Juvenile bud 1	425.307
	CRR073304	Juvenile bud 2	466.456
	CRR073305	Juvenile bud 3	46.713
	CRR073306	Third green 1	279.366
	CRR073307	Third green 2	411.595
	CRR073308	Third green 3	284.409
	CRR073309	Second white 1	27.695
	CRR073310	Second white 2	58.980
	CRR073311	Second white 3	67.366
	CRR073312	Silver flowering 1	324.803
	CRR073313	Silver flowering 2	359.339
	CRR073314	Silver flowering 3	181.355
	CRR073315	Gold flowering 1	296.623
	CRR073316	Gold flowering 2	64.824
	CRR073317	Gold flowering 3	191.188
	CRR073318	Tawny withering 1	255.456
	CRR073319	Tawny withering 2	267.790
	CRR073320	Tawny withering 3	220.459